Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39435 157 / 5e-41 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) AT3G53540 118 / 6e-27 unknown protein AT4G28760 74 / 4e-13 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213700 [exp] 156 / 8e-39 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 143 / 8e-35 AT3G53540 234 / 1e-64 unknown protein Potri.002G253600 [exp] 95 / 9e-20 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.014G194600 [exp] 58 / 2e-08 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 58 / 4e-08 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G239500 [exp] 54 / 6e-07 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.016G095500 [exp] 46 / 0.0001 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003295 [exp] 256 / 6e-75 AT2G39435 115 / 3e-27 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10030320 [exp] 224 / 1e-63 AT2G39435 99 / 6e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10025296 [exp] 128 / 4e-30 AT3G53540 456 / 7e-146 unknown protein Lus10024434 [exp] 122 / 4e-28 AT3G53540 449 / 2e-144 unknown protein Lus10022843 [exp] 58 / 2e-08 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10040814 [exp] 57 / 9e-08 AT5G02390 129 / 4e-31 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10011911 [exp] 54 / 8e-07 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [poplar] [flax] DUF3741 Protein of unknown function (DUF3741) PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378)
Representative CDS sequence Show only first row Show all	>Potri.010G211700.2 pacid=42798297 polypeptide=Potri.010G211700.2.p locus=Potri.010G211700 ID=Potri.010G211700.2.v4.1 annot-version=v4.1 ATGGAAATGAAACCTAAACAAATCACAGAAAGTGTGATTGCAAAATTAATGGGTCTTGATGAACTGCCACCCCAGCAGCCTGTTCAAAAGAAACCAAGAG TGCTCTCTGAGAATTATCTACGAAGAGTTTCTTCTATAGGTGTTAGAGAGAAAAATTCAGAACCTAACTCATGTAGGTTGAGTAGTGAAGAGCAGAAAGA TCATATCGAAGTCTTCCAAATATTAGAAACATTAAAGAGACACAAGCACCGTAGCATGTCAGTTGAAAAGAGAAAAATACGTTCAAGTTCCCCAGGGGCA AAGGTGATGTTTAGAAGGGAGGAATTCAAGCAATCGACAGATGTTTCAGAGGATATGAAGCTTCAAAGTTCAAAGGAATGTCATGATGCACAGGAAGTTA TTGATTCAAAGACTGATAATTTTCCAAAATATTTCCAGGAACCAGAGTTCACCAAGAAAGCAAATAATCTGCAAGGCATCCCTCATTACTTGCAGCCAGG GCTCATTACATTTGTAAGGCCATTGTGTCCTTCTGACCGCAGAGATATTGGCAGGAGCAGGAAATTTTGGAGGCCAAGTGAACAAGGATATGCAAGGAAA ATTGAAGATGGCCTTGGGACATATTCCTGCAGAAAACTTGGCCTTGACGTTGCTAATGAGTTTCTTGGATCACAATTGGATTTGAATGATGGGTCATGCC TCCCCACTACCAGGATTGTTGTTCTGAAACCAAAGCCAGGAAAGGCACATAATGCTGGAAGATATTTTTCATCTACCGGTGCTATTGAGGTTTTTCATTC AGTTGATAGGAATCATGAAGAGATTCTCAACGTTCAAAATGAAAACTTGTATGCTGAAGTGAAAGAAAGGAAGAAGATGGACTGTGACTCAAGACCTGCA AGGTCGAGGTCTAGGTTTTCAAAGCAAATAAGCAGAAGAATGGGGCATGGTATAAACAGCATTTCTACTAAGGCACAGGCGTCTGAAATCAGGGGTAGTG ACAACTTGCCTAAAGAGTCTGAGTTGATGATACCTTCTTTGCCTGTTTTTTCTGATAGGAAGAACCAATTTCACTGTTCAGATGAGCCATATCTGGCCAG GGAAGCCAAGAAACAAATCTCTGAAAGATGGAAGACGACCAAAAAGTTTCAGCAGGTTGAACTAGTTAGTAGGTGTAAAACCTTGGGTGAAATGCTTGCC ATTCCTGATTGTGAAGCAAGGCCAAAACAATTTGCTTGCAATCCTGATAACTATGATCAAGTCGTTCCTGACAGTGGAGGTGTGAACTCTAATACTCCTT TAGGCACAAGAAGCCTGGAATTTCGGGATGGTGGGCATGTCAGAGACTTACCAAAATCCAGATCTCTTCTTGTGAATTTTAATACAGTTGCAGGTCCTAA AACCATGACCAGACATAAATCTCTTCGAAAGTCCAGCTGTATGATTTCTCCATCAATTCCTCATCTGGTGTCAGAAAACAATCATTCTGCAGATGCTGTT TATGCTCTTCAAAATGAACTGGAAAACAAAATTGAGGTGAGCAATTCACATGGCCGAAGTTCCTCATTTCTCGGTTCATCTGGACAAAACTATCAGACCT TGCAAGATCCTTGGGTGACACAGGGGGGGCACAAGAATGAAGGCAGTGATGGGGATCTATCTGAAAAGAATTATGAAGTTTGCAAATCTTCAATGAGCAA TATTTCTTCAACTAACGTGGTAGTTAATTCACCGGCTGATGCAGAAATTGCAGTTCCAAAGAGGTCCCTGTCATATCACGAGTTGCTTGAATTGGAACCT AACAATTGTGTCTCGCTAGTAAAAGATGAATATTCTTCTCGAGACCCACCTACTTCAACTCAGCAGGATATATCCAATGGAATCTCTGAGATAGAGTCTG TTTCTTCACACTGCTCCGGCACCGACGGAGACCCGGAATCTTTGATGAGCATTGAGGAAGCTTATCAACCTAGTCCAGATTCTGTACTGGAACCATTATT CAAGAAAGAGATTTCATCTACCTCTGACTGTTTTGAGAGCGTCCATGCTTCTTTACATGGTTTACAGTCGCATCTTGAACTTATGAAGTCGGAGGCATCA GAAACATACTCAGAAGGATCTGGCATGATGGTTTCTAGCGATGAAGATTCTGGGGAAGGAGGATCAATGGATGACTCTGATGAAAATGACAAGACGAGAT TTTTCAGAGCTGAAGAGAGTAGGGATTTCTCCTACCTGGTTAATGTATTGTCCGAGGCAGGTTTTGACAGTAGGAACCTGAAAATGGGCTTTGATTCGTG GCACTCTCAAGAATACCCGGTTAGTCCTCTTGTCTTTGAGACCCTTGAGAAAAAGTTTGGTGAGCAGACATCTTGGAAGAGGTTTGAAAGGAGGCTCCTG TTTGATCGTATAAATTCAGGGCTGATTGAGATTCTACAGCCATCCATGGGTGTGCCGACATGGACAAAACCTGTAGCAAGAAGGTTTAGTTTTAGTATGG GCCAGGAGATGATTGAGGAGGAGTTATGGATGTTGCTGGTTGCTGAGGAAAAGGAAGCCAGCAAGGAGTCTGGAAAGGTGCTGGGGAAGGATGACAAGTG GTTAGAGTTGAGTGATGATGTTCAGATCATCGGTATAGAAATAGAAAATTGTTTGATGGACGAGCTGGTTGCAGATGTTGTTAGCATGGAGAGTTTCTGA
AA sequence Show only first row Show all	>Potri.010G211700.2 pacid=42798297 polypeptide=Potri.010G211700.2.p locus=Potri.010G211700 ID=Potri.010G211700.2.v4.1 annot-version=v4.1 MEMKPKQITESVIAKLMGLDELPPQQPVQKKPRVLSENYLRRVSSIGVREKNSEPNSCRLSSEEQKDHIEVFQILETLKRHKHRSMSVEKRKIRSSSPGA KVMFRREEFKQSTDVSEDMKLQSSKECHDAQEVIDSKTDNFPKYFQEPEFTKKANNLQGIPHYLQPGLITFVRPLCPSDRRDIGRSRKFWRPSEQGYARK IEDGLGTYSCRKLGLDVANEFLGSQLDLNDGSCLPTTRIVVLKPKPGKAHNAGRYFSSTGAIEVFHSVDRNHEEILNVQNENLYAEVKERKKMDCDSRPA RSRSRFSKQISRRMGHGINSISTKAQASEIRGSDNLPKESELMIPSLPVFSDRKNQFHCSDEPYLAREAKKQISERWKTTKKFQQVELVSRCKTLGEMLA IPDCEARPKQFACNPDNYDQVVPDSGGVNSNTPLGTRSLEFRDGGHVRDLPKSRSLLVNFNTVAGPKTMTRHKSLRKSSCMISPSIPHLVSENNHSADAV YALQNELENKIEVSNSHGRSSSFLGSSGQNYQTLQDPWVTQGGHKNEGSDGDLSEKNYEVCKSSMSNISSTNVVVNSPADAEIAVPKRSLSYHELLELEP NNCVSLVKDEYSSRDPPTSTQQDISNGISEIESVSSHCSGTDGDPESLMSIEEAYQPSPDSVLEPLFKKEISSTSDCFESVHASLHGLQSHLELMKSEAS ETYSEGSGMMVSSDEDSGEGGSMDDSDENDKTRFFRAEESRDFSYLVNVLSEAGFDSRNLKMGFDSWHSQEYPVSPLVFETLEKKFGEQTSWKRFERRLL FDRINSGLIEILQPSMGVPTWTKPVARRFSFSMGQEMIEEELWMLLVAEEKEASKESGKVLGKDDKWLELSDDVQIIGIEIENCLMDELVADVVSMESF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39435			Phosphatidylinositol N-acetygl...		Potri.010G211700 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	7.34	0.8214
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	12.96	0.8145
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014336 [exp]	15.96	0.8028
					Potri.019G014314 [exp]	18.33	0.7947
AT2G28940			Protein kinase superfamily pro...		Potri.001G240500 [exp]	20.71	0.7169
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136301 [exp]	26.83	0.7787
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Potri.006G001100 [exp]	29.08	0.7170
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.005G135100 [exp]	29.17	0.7747
AT1G06840			Leucine-rich repeat protein ki...		Potri.019G131800 [exp]	30.72	0.8036
AT2G15760			Protein of unknown function (D...		Potri.009G105400 [exp]	31.73	0.7443

Compare expression of checked genes

Potri.010G211700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.