Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39380 644 / 0 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT3G55150 614 / 0 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT3G09520 498 / 1e-169 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT5G59730 484 / 2e-164 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT2G28640 441 / 7e-148 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT3G09530 441 / 3e-147 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT1G07725 421 / 4e-140 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT2G28650 396 / 9e-131 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT3G14090 298 / 2e-92 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 290 / 3e-89 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048700 [exp] 941 / 0 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.009G026900 [exp] 589 / 0 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.001G234600 [exp] 586 / 0 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.006G214300 [exp] 571 / 0 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.012G097100 [exp] 303 / 4e-94 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 296 / 2e-91 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 295 / 5e-91 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 294 / 1e-90 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093966 [exp] 279 / 5e-85 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040329 [exp] 579 / 0 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10024438 [exp] 533 / 0 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10005436 [exp] 532 / 0 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10023450 [exp] 528 / 0 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10015221 [exp] 521 / 2e-178 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10025291 [exp] 516 / 1e-176 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10040872 [exp] 513 / 2e-175 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10023452 [exp] 511 / 4e-175 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10004917 [exp] 492 / 3e-167 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10040331 [exp] 487 / 4e-165 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.010G212400.1 pacid=42799377 polypeptide=Potri.010G212400.1.p locus=Potri.010G212400 ID=Potri.010G212400.1.v4.1 annot-version=v4.1 ATGGCTCGGTCAGAAACTCCAAGGAGTATTGCAGCAAAAAGAGGGATGCTAGCCCGCCTTTTCTCATCCTCAACAACACTCTCCTTCTCCTCTTCACTTT CAACCCCTTCTACTCCTTCCACTCCTTCCTCCTCTACCCCCAACATGTTCTCCGAATCCGTGATGGAGGAAACTATAAAAAATGTTGAATCAATCATCAC CAAATGGGATCCAAACTCTTCATCAATTACCAGAGTCACCTCTCTCTTCCATAGTAACAGAGAAGAAGCAGAAGATTTTCTCGAAAGTGTCAAAGACTTG CGTCGAGCAATGCATGCATTGGTCTCTGAACATTCGACCTCTGATAAGCTTTTGCTTGCCCAGAACCTCATGCAAATCGCCATGGCAAGACTTGAGAAGG AATTCTATCAGATACTGTCTGCAGCACGTGATCATCAAATAGACCCAGAGTCTATTTCAGCTCGATCCTCGGAGGGGTCGAGTAATCTCGAAGATGAGAA TGAGCTTGGATCTGAAGAAGAGTTCAAAACAGCAGGTGAGTCAAACACTAACGTGGAGAGAGTCACAGCACTAGCCATGTCATCAGACCTCAAAACTATA GCTGACTGTATGATAAGTTCTGGCTACAGCATTGAGTGTATCAAAATATACAAACTTATCAGAAAATCAATCGTGGATGAAGGATTGTATCTGCTCGGAA TCGAAGAATTCAGGCCTTCTCAAATTCTCAAAATGAATTGGGAAGCTCTCGAGCATCAGATCAAGAACTGGCTGAATGCAGTAAAGATTGCCGCGAAAAC ACTCTTTAGTGGAGAAAAAGCTCTCTGTGATCACGTGTTTTCAGCATCTCAGACGATCAGGGAATCATGCTTCTCTGAGATAACAATAGGAGGACTAAAT CTTTTCAGATTTCCTGAGCTTGTAGCTAAGTGCAAGAAATTGCCAGAGAGGATTTTCCCACTATTGGATCTCTACGAAGCACTCTCTGATATCCGGCCAG ATGTAGAATTGATATTTGACTCTGAATCAACCTCAAAGATTAAACAGCAGGCAGTTTCATCACTACATGGACTTGGCGAGTCAATCCGTGCCATTCTTTC CGAATTTGAATCAACAATTCAAAAGGACTCGTCAAAAACTCTAATCGTTGGTGGCGGGATTCACCCACTGACCCAAAAGGTTACGAGTTACATATCTTCA CTTGCAGATTACAGCAGGATTCTCTCGGACATTGTTGCTGATTCTTCACCACCAAGGAATACAGCTTTCCCTGAAGCTTACTTTGAGAGTCCAAACTATG ATGCCAGTTCAACACCAGCAGTCTCAGTTCACCTAGCTTGGCTCATTTTAGTCCTTTTATGCAAGCTTGATAGAAAAGCAGATCTTGGGTACAAAGATAT GTCTTTGTCATACCTATTCCTAGCAAACAATCTTCAGTTTGTCCTTGATAAAGTTTGTACAACTCGCCTTTATGTGCTTCTCGGTGAGGATTGGGTGTTC AAGCATGCCGAGAAGGTTATACAATATGCTTCCACCTATGAAACGATGGCATGGGGTAACGCCTTCTCATCTTTACCAGAGAAAAATTCTCCACTACTGT CTCCTGAAGCAGCAAAGGAATGTTTTCAGAGGTTCAACGCAGCTTTTGAAGAAGCATATAAGAAACAAGCATCATGGGTTGTGCCGGATAGGAGGTTGAG GGATGAATTGAAGGTGTCAATTGCAAAAGAACTTATACCAGCATACAGAGAATTTTATGACACGCATAAGGTGATGTTGAGGAGGGTGAAGGATTTTGAG GTGTTTGTAAGGTTCGGCCCTGACGATCTTGGGAATTACCTCTCGGATTTGTTTCATGGAACTGCCATTTCAGGCAGTACCTCACCTCCTACACCGCGAT AA
AA sequence Show only first row Show all	>Potri.010G212400.1 pacid=42799377 polypeptide=Potri.010G212400.1.p locus=Potri.010G212400 ID=Potri.010G212400.1.v4.1 annot-version=v4.1 MARSETPRSIAAKRGMLARLFSSSTTLSFSSSLSTPSTPSTPSSSTPNMFSESVMEETIKNVESIITKWDPNSSSITRVTSLFHSNREEAEDFLESVKDL RRAMHALVSEHSTSDKLLLAQNLMQIAMARLEKEFYQILSAARDHQIDPESISARSSEGSSNLEDENELGSEEEFKTAGESNTNVERVTALAMSSDLKTI ADCMISSGYSIECIKIYKLIRKSIVDEGLYLLGIEEFRPSQILKMNWEALEHQIKNWLNAVKIAAKTLFSGEKALCDHVFSASQTIRESCFSEITIGGLN LFRFPELVAKCKKLPERIFPLLDLYEALSDIRPDVELIFDSESTSKIKQQAVSSLHGLGESIRAILSEFESTIQKDSSKTLIVGGGIHPLTQKVTSYISS LADYSRILSDIVADSSPPRNTAFPEAYFESPNYDASSTPAVSVHLAWLILVLLCKLDRKADLGYKDMSLSYLFLANNLQFVLDKVCTTRLYVLLGEDWVF KHAEKVIQYASTYETMAWGNAFSSLPEKNSPLLSPEAAKECFQRFNAAFEEAYKKQASWVVPDRRLRDELKVSIAKELIPAYREFYDTHKVMLRRVKDFE VFVRFGPDDLGNYLSDLFHGTAISGSTSPPTPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Potri.010G212400 [exp]	0	1
AT2G31335			unknown protein		Potri.008G162900 [exp]	1.00	0.9919
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Potri.006G048100 [exp]	1.41	0.9884
AT5G11210		ATGLR2.5	ARABIDOPSIS THALIANA GLU, glut...		Potri.001G375133 [exp]	20.27	0.9856
AT5G06740			Concanavalin A-like lectin pro...		Potri.016G045000 [exp]	23.06	0.9856
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.016G069500 [exp]	25.39	0.9523
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375100 [exp]	26.17	0.9856
AT2G15220			Plant basic secretory protein ...		Potri.009G094500 [exp]	27.71	0.9855
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375000 [exp]	30.96	0.9854
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.001G375166 [exp]	33.58	0.9854
					Potri.015G034166 [exp]	35.11	0.9853

Compare expression of checked genes

Potri.010G212400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.