Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 575 / 0 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT2G28630 496 / 4e-174 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 496 / 6e-174 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT1G01120 341 / 1e-112 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G68530 337 / 3e-111 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G19440 333 / 9e-110 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT4G34510 332 / 2e-109 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G16280 329 / 4e-108 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34520 328 / 7e-108 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT2G26250 330 / 8e-108 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119600 [exp] 626 / 0 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 593 / 0 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 562 / 0 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 554 / 0 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.009G026800 [exp] 535 / 0 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 530 / 0 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.008G048500 [exp] 471 / 2e-166 AT5G04530 337 / 2e-113 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 342 / 6e-113 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G196200 [exp] 340 / 1e-112 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023458 [exp] 603 / 0 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 600 / 0 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10005434 [exp] 502 / 4e-176 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 501 / 1e-175 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10002191 [exp] 454 / 1e-157 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 456 / 1e-156 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 444 / 2e-153 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 435 / 4e-146 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10004918 [exp] 407 / 1e-139 AT2G28630 560 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10040873 [exp] 402 / 3e-138 AT2G28630 546 / 0.0 3-ketoacyl-CoA synthase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.010G212600.1 pacid=42799800 polypeptide=Potri.010G212600.1.p locus=Potri.010G212600 ID=Potri.010G212600.1.v4.1 annot-version=v4.1 ATGATACTCTGTACTCTCTTCTTCATTATTTTCTGCCTTTGTAAATTGGTTTTCCTGAAAAGAGAATCCTGTTGCTACATGCTGGCTTACGAGTGCTATA AAGCTCCAGAGGATAGGAAGCTTGACACAGAAACTAGTGCAAAAATCGTCTTCAGAAATAAGAACCTGGGGATAGAAGAATACAAGTTTCTATTACATAC TATTGTTAGTTCTGGCATTGGTGAAGGGACGTATGTCCCTAGAAACATTATCTCAGGCCAGGAAGATTCCTCAACTCTCAAAGTTTCCATTACGGAAATG GATGATCTCATCTTTGACACACTCGACAAGCTCTTTGCCAAAACAGGAATTTCTCCATCAGAAATTGACATACTTGTTGTCAATGTTTCTTTGTTCTCTC CTGCACCTTCTCTAGCAGCTCGCGTTGTTAATCGTTACAAGATGAGATCCAACGTTAAAACTTTCAACCTCTCTGGAATGGGATGCAGTGCAAGCGTTGT ATCCATTGATCTTGTGCAGCACTTGTTCAAGTCACACAAGAATGCATTCGCTGTTGTTGTGAGTACAGAATCGATAGGTCCAAATTGGTACCAAGGCAAA GAAAAATCCATGATGCTCTCAAACTGTCTGTTCCGTTCAGGAGGTTGCTCGATGCTCTTCACAAACAACAGCGCTTTAAAACGTCAAGCCATCTTCAGAT TGAAACATCTTGTACGTACGCATCTTGGCTCAAAAGATGAGTCCTACGGATGCTGCACTCAAACAGTAGATGACCTTGGCTATAAAGGTTTTCTCCTTAC TAAAAGCCTTAAAAAATCTGCTGCTCAGGCTCTTGCTTTGAATCTCCGTGTCTTAGCACCTAAAATGTTACCAGTAAGTGAACTAATTCGCTATGTTTAT GTATCTCTTCGAGAAAAGAAAACCAAAAGCACCAGTATTCAAGAAATGGGAGCAGGTTTGAATCTGAAGACTGGAGTAGACCATCTCTGTATACACCCGG GTGGAAGGGCAATTATTGATGAGGTTGGGAAAAGTTTAGGCCTTAGTAATTATGATCTTGAGCCAACTAGAATGGCACTTCATCGATTTGGCAACACATC AGCTGGTGGCCTTTGGTATGTTTTAGCCTACATGGAGGCCAAGCAGAGGCTTAAGAAAGGTAATAAAATACTAATGATCAGTCTCGGTGCAGGTTTCAAG TGCAACAACTGTGTGTGGGAGGTAATGAGGGACCTGGAGGATGTCAATGTTTGGAAAGACAGTATTGACCAATATCCTCCAGAAACCACAGTCAATCCAT TCATCGAAAAGTATAGTTGGATCAATGAAGAATATCTCAGCTTTGTTAGATTTCACTAG
AA sequence Show only first row Show all	>Potri.010G212600.1 pacid=42799800 polypeptide=Potri.010G212600.1.p locus=Potri.010G212600 ID=Potri.010G212600.1.v4.1 annot-version=v4.1 MILCTLFFIIFCLCKLVFLKRESCCYMLAYECYKAPEDRKLDTETSAKIVFRNKNLGIEEYKFLLHTIVSSGIGEGTYVPRNIISGQEDSSTLKVSITEM DDLIFDTLDKLFAKTGISPSEIDILVVNVSLFSPAPSLAARVVNRYKMRSNVKTFNLSGMGCSASVVSIDLVQHLFKSHKNAFAVVVSTESIGPNWYQGK EKSMMLSNCLFRSGGCSMLFTNNSALKRQAIFRLKHLVRTHLGSKDESYGCCTQTVDDLGYKGFLLTKSLKKSAAQALALNLRVLAPKMLPVSELIRYVY VSLREKKTKSTSIQEMGAGLNLKTGVDHLCIHPGGRAIIDEVGKSLGLSNYDLEPTRMALHRFGNTSAGGLWYVLAYMEAKQRLKKGNKILMISLGAGFK CNNCVWEVMRDLEDVNVWKDSIDQYPPETTVNPFIEKYSWINEEYLSFVRFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.010G212600 [exp]	0	1
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.015G110700 [exp]	1.00	0.9913
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	2.00	0.9877
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227300 [exp]	2.44	0.9863
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.008G157300 [exp]	2.82	0.9851
AT1G48405			Kinase interacting (KIP1-like)...		Potri.015G030100 [exp]	3.46	0.9739
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076400 [exp]	4.47	0.9792
AT2G27240			Aluminium activated malate tra...		Potri.001G217200 [exp]	6.70	0.9658
AT4G31980			unknown protein		Potri.013G146300 [exp]	6.70	0.9518
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G084500 [exp]	6.92	0.9598
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.001G058600 [exp]	8.00	0.9232

Compare expression of checked genes

Potri.010G212600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.