Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12360 858 / 0 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 738 / 0 Ankyrin repeat family protein (.1) AT2G31820 331 / 4e-105 Ankyrin repeat family protein (.1) AT1G05640 318 / 1e-100 Ankyrin repeat family protein (.1) AT5G60070 312 / 3e-99 ankyrin repeat family protein (.1) AT1G07710 308 / 1e-97 Ankyrin repeat family protein (.1) AT2G01680 301 / 2e-95 Ankyrin repeat family protein (.1) AT5G02620 292 / 1e-91 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54710 92 / 3e-19 Ankyrin repeat family protein (.1) AT1G10340 90 / 1e-18 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048400 [exp] 990 / 0 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 758 / 0 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 335 / 5e-108 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 334 / 8e-108 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 331 / 2e-106 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 332 / 6e-106 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 327 / 2e-105 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 320 / 3e-102 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 319 / 4e-102 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003308 [exp] 927 / 0 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 855 / 0 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10040335 [exp] 768 / 0 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 707 / 0 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 687 / 0 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 335 / 5e-108 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 335 / 5e-108 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 324 / 8e-104 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 321 / 2e-102 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 317 / 4e-100 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.010G212700.3 pacid=42797756 polypeptide=Potri.010G212700.3.p locus=Potri.010G212700 ID=Potri.010G212700.3.v4.1 annot-version=v4.1 ATGGCTTCACCTTTGGAAGAAGGGAGGGAGAGGGATTTAGAGAAGGGATTAGTGCAACCACAACTAAACCAAAACGCTCTTGCCGAGCCATCACCAACAC CATCGCCATCTTCAACATCAACTGCCCCAGCTCTAGTTTTATCGAATTCGGGCAAACGAATTGACCAAGCTGGGAAGAAGAAGTATGTAAAACAAGTCAC TGGTCGTCACAATGATACCGAGCTCCATTTGGCAGCTCAGCGCGGCAATTTGGACGATGTGCAGCGGATTCTCAATGATATCTCAAAAATGATGGGAACT TCGAGTGGGGATGACTTTGATGCAGAGGTCGCAGAGATAAGGGCATCAGTGGTTAATGAAGTGAATGAGTTGGGGGAGACTGCGCTGTTTACTGCTGCAG ATAAAGGTCATCTTGAGGTGGTTAAGGAATTGCTGCAATATTCGAATAAGGAGGGCCTCACGAGGAAGAATAGGTCGGGGTATGATTCGTTGCATATTGC TGCCGTCCAAGGGCACCACGCCATTGTCCAAGTGCTGCTGGATCATGACCCCAGTCTGAGCCAAACACATGGCCCATCGAATGCAACTCCTCTTGTATCT GCTGCTACAAGAGGGCATACTGCAGTAGTCATTGAATTGCTGTCAAAGGATGGTAGCTTATTGGAGATTTCTAGATCTAATGGGAAAAATGCGTTGCATT TAGCTGCCCGACAGGGACATGTAGATATTGTAAAAGCATTGCTTAGCAAAGATCCCCAGCTAGCACGGAGGACAGACAAGAAAGGGCAGACTGCTTTGCA GATGGCTGTAAAAGGGCAGAGCTGTGAGGTGGTGAAATTGCTTCTCGATGCAGATGCTGCGATTGTGATGCTTCCGGACAAGTTTGGCAACACAGCATTG CATGTAGCAACAAGGAAAAAGAGAGTAGAGATAGTGAATGAGTTGTTATCACTCCCAGACACCAATGTTAATGCTCTGACCAGAGATCACAAAACTGCCC TTGATTTAGCAGAAGAGCTGACCCTTTCTGAAGAATCATCAGATATAAAGGAGTGCCTTTCTCGCTATGGTGCTCTTAGAGCTAATGAACTCAACCAACC AAGGGATGAGTTGAGGAAAACTGTTACTCAAATTAAGAAAGATGTTCACACACAGCTGGAACAAACCAGAAGGACCAACAAGAATGTCCATAATATTTCA AAAGAGCTTAGAAAGTTACACCGTGAAGGGATCAACAATGCCACCAACTCTGTAACTGTGGTTGCAGTGCTATTTGCGACCGTTGCTTTTGCAGCTATCT TCACTGTACCAGGTGGTGATAGGGATAGTGGGGTGGCTGTGGTGGTGACTCATGCTTCTTTCAAAATCTTCTTCATATTTAATGCTATCGCTCTCTTCAC GTCCTTGGCTGTTGTGGTGGTTCAAATTACTTTGGTCAGGGGTGAGACAAAAGCAGAGAGGCGAGTAGTGGAGGTGATTAACAAATTAATGTGGTTGGCT TCTGTGTGCACATCAGTGGCTTTTATGGCCTCCTCTTACATAGTGGTTGGCCGTAAACATGAATGGGCTGCAATGTTAATTACTATTGTTGGCGGTGTTA TAATGGCCGGAGTTCTCGGGACCATGACTTATTATGTGGTGAAGTCCAAGAGGATTCGCTCAATGAGGAAAAAGGATAAGCATGCAAGGAGAAGTGGTTC GAGTTCGTGGCATCATAACTCAGAATTCTCTAATTCAGAAGTTGATCGGATCTTTGCCCTTTGA
AA sequence Show only first row Show all	>Potri.010G212700.3 pacid=42797756 polypeptide=Potri.010G212700.3.p locus=Potri.010G212700 ID=Potri.010G212700.3.v4.1 annot-version=v4.1 MASPLEEGRERDLEKGLVQPQLNQNALAEPSPTPSPSSTSTAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGNLDDVQRILNDISKMMGT SSGDDFDAEVAEIRASVVNEVNELGETALFTAADKGHLEVVKELLQYSNKEGLTRKNRSGYDSLHIAAVQGHHAIVQVLLDHDPSLSQTHGPSNATPLVS AATRGHTAVVIELLSKDGSLLEISRSNGKNALHLAARQGHVDIVKALLSKDPQLARRTDKKGQTALQMAVKGQSCEVVKLLLDADAAIVMLPDKFGNTAL HVATRKKRVEIVNELLSLPDTNVNALTRDHKTALDLAEELTLSEESSDIKECLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNIS KELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDRDSGVAVVVTHASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAERRVVEVINKLMWLA SVCTSVAFMASSYIVVGRKHEWAAMLITIVGGVIMAGVLGTMTYYVVKSKRIRSMRKKDKHARRSGSSSWHHNSEFSNSEVDRIFAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.010G212700 [exp]	0	1
AT5G15870			glycosyl hydrolase family 81 p...		Potri.004G105300 [exp]	2.44	0.8471
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Potri.004G163300 [exp]	3.00	0.8380	Pt-SPE1.1
AT3G09830			Protein kinase superfamily pro...		Potri.006G126000 [exp]	5.19	0.8837
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	6.92	0.8383
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	9.79	0.8470	TGA3.1
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	10.95	0.8442	ATCNGC19.5
AT1G64050			unknown protein		Potri.003G133100 [exp]	12.96	0.8022
AT4G17900			PLATZ transcription factor fam...		Potri.003G092800 [exp]	13.56	0.8454
AT3G19910			RING/U-box superfamily protein...		Potri.007G073200 [exp]	13.63	0.8393
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.011G118800 [exp]	15.71	0.8335

Compare expression of checked genes

Potri.010G212700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.