Plant FIBer expression Database

Potri.010G212900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13560 749 / 0 unknown protein
AT2G37370 544 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G048100
[exp]
1121 / 0 AT5G13560 668 / 0.0 unknown protein
Potri.016G080900
[exp]
615 / 0 AT2G37370 676 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040337
[exp]
842 / 0 AT5G13560 791 / 0.0 unknown protein
Lus10023462
[exp]
825 / 0 AT5G13560 795 / 0.0 unknown protein
Lus10025285
[exp]
494 / 3e-167 AT2G37370 535 / 0.0 unknown protein
Lus10009063
[exp]
232 / 3e-68 AT2G37370 241 / 4e-72 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G212900.1 pacid=42799845 polypeptide=Potri.010G212900.1.p locus=Potri.010G212900 ID=Potri.010G212900.1.v4.1 annot-version=v4.1
ATGTCGTGGTTGAGATCTGCTGTGAGCAAGGCAGTGGAAGCAGGGAACAAAAACAACCTGACTCGAGCCGTCAAAAACTACGCCGACTCCGTTGTTCACC
AAGCCGGTCAAGCCGTCTCCGAAGGAGCCAAAATCTTGCAAGATCGTATAGGGAATAGGAATTATAAAAGTGCTAAGCAAACTGCTAAGAGATTAGAGGA
GGTTGCAATCTCCTGTCGCGGCCTGGAGAGGGTTTTGTTGCTCAGAAGATGGTTGGTTGTGCTTAAACAATTCAATAAGCCATCAGGAGGTTTGTCTGAA
GATAAACAGACATCCGTCGAGCAAAATGTTGGCCCTGATGAATCAAAGGGCAGTCCAAGGAATCGCACACTGCCCATGGTTCTGTATTATGATTCTGATG
TCGGGGGTGAACCGTTGACTTTCTGGGATATTTTTCTCCAAAGTCAAGCTCTAGAAGGAATAACAACGTCCATGATTCTTGAAGCACCAAATGAGGAAGA
AATTTCTTTGCTGCTGGAGGTGTTTAGGCTCTGTCTAACTGGAGGACAAGAAGTTCATAATGCAGTTGTGAGCAGTATACAGGATCTGGCTTCTGCTTTT
GCAAGCTACCAAGATGAAGTGTTGGTGAAGCGGGAAGAATTGCTTCAGTTTGCTCAAAATGCCATTACAGGGTTGAAAATCAATGTCCATCTTGCAAGAA
TAGATGCTGAAGCTACGGTTCTGAGGAACAAACTTGATGGAATTATGCATTCCAAGAAGCCATCAAGTGAAGATCAGGAAAAGGAGTTCGATGAAAAGGC
TAAAGCAACTATAGAGGCACTGAAAGAAGCTCTTGCACAAATTCGAATTTGTTCCAGATTGGAAGGGCTTTTGTTGAAAAAGAATACTTTGAACTTGGGA
GACTCTCCTGACATTCATGCTCAAAAGGTTGACAAGTTGAAGGTCTTATCAGAATCTCTTGCTAGCTCTACATCAAAAGGTGAAAAGCGCATCATAGATC
ACAGATTGCAAAAAGAAGAGGCGCTGAAAGTTCGTGTTGTCAAAGCTGATGAAGCAAATGAAAAGGAGAAGGAAATAGTAGCTGAGGTATCAGCACTTGA
AAGACAAAGGGACAAACTTGAAGCTGAATTGAAAATGGTCAATGCCTCCTTAGCTGTTGCAAATGCACGCCTTCACGATGCCAGGGAAGAGAGGGATCAG
TTTGATGAAGCTAACAATCAGATAGTTGAGCATTTGAAAACAAAGGAAGATGAGGTGTCAAAAACAATTGCTGCATGCAAGGTAGAAGCAGCTGTTCTAA
GCACTTGGCTCAATTTTCTGGAAGATACTTGGCTTCTCCAGCAATCTCACACTGAAGCTAAGGAGAAGCAGCTCAATGATGAGCTGGAGAGACATGAGGA
CTATTTTGTGAAGTTGGCTATTCATCTTCTCTCTGAGTACAAGAAAGAGTTGGAGCCTTCTATCAGCCGCATAGAGAAATTTGTGGAAAACCTAAAGAAT
TTAAGTGGAGGGTTGGAGATGGCATCCAGTTCAGATAATGAAGATTCTAAAGAATTAAACCCAAGGAAAAATCTTGAGGAGGAATATTTGGATTATGAAG
CAAAGATTATAACCACCTTCAGTGTAGTGGACAACATGAGAGAGCAGTTTTATGCTCAGAAAGGGGAAAGTTCTAGGAAGGATGATACTACGGTTAAAGA
GCTATTTGATGATATTGAAAAGTTGAGAGTGGAATTCGAGTCCATTGAGAGACCAAATCTAGAATTGGAGATTCCGACCCCGAAGGCTGATTCTACATCT
GAGAAGCCATTGGGAAGCCCATCCCACATCTCAACACAGAATGCGACTACTCTTAAATCCAATATAGATGAGCATCCCAAAGCACCTGCAGTAGAGGCAG
ATGAGGTGCTCGACCCTGCAGCAGAACTTGCAAAGTTAGAGTCAGAATTTGGGAAAGATGCTCGGGACTACTCAACTGAGGAGATCGGTGACTGGGAGTT
TGATGAGCTTGAAAGGGAATTGAGATCCGGTGATACAGCAACAAACAGCTAG
AA sequence
>Potri.010G212900.1 pacid=42799845 polypeptide=Potri.010G212900.1.p locus=Potri.010G212900 ID=Potri.010G212900.1.v4.1 annot-version=v4.1
MSWLRSAVSKAVEAGNKNNLTRAVKNYADSVVHQAGQAVSEGAKILQDRIGNRNYKSAKQTAKRLEEVAISCRGLERVLLLRRWLVVLKQFNKPSGGLSE
DKQTSVEQNVGPDESKGSPRNRTLPMVLYYDSDVGGEPLTFWDIFLQSQALEGITTSMILEAPNEEEISLLLEVFRLCLTGGQEVHNAVVSSIQDLASAF
ASYQDEVLVKREELLQFAQNAITGLKINVHLARIDAEATVLRNKLDGIMHSKKPSSEDQEKEFDEKAKATIEALKEALAQIRICSRLEGLLLKKNTLNLG
DSPDIHAQKVDKLKVLSESLASSTSKGEKRIIDHRLQKEEALKVRVVKADEANEKEKEIVAEVSALERQRDKLEAELKMVNASLAVANARLHDAREERDQ
FDEANNQIVEHLKTKEDEVSKTIAACKVEAAVLSTWLNFLEDTWLLQQSHTEAKEKQLNDELERHEDYFVKLAIHLLSEYKKELEPSISRIEKFVENLKN
LSGGLEMASSSDNEDSKELNPRKNLEEEYLDYEAKIITTFSVVDNMREQFYAQKGESSRKDDTTVKELFDDIEKLRVEFESIERPNLELEIPTPKADSTS
EKPLGSPSHISTQNATTLKSNIDEHPKAPAVEADEVLDPAAELAKLESEFGKDARDYSTEEIGDWEFDELERELRSGDTATNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13560 unknown protein Potri.010G212900
[exp]
0 1
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Potri.009G087200
[exp]
1.73 0.9380
AT1G79420 Protein of unknown function (D... Potri.010G174200
[exp]
3.16 0.9267
AT3G08510 ATPLC2 phospholipase C 2 (.1.2.3) Potri.008G068400
[exp]
3.46 0.9074 Pt-PLC1.2
AT5G45970 ATRAC2, ATROP7,... RHO-RELATED PROTEIN FROM PLANT... Potri.011G061500
[exp]
4.89 0.9181 ARAC2.1
AT3G27890 NQR NADPH:quinone oxidoreductase (... Potri.001G028000
[exp]
6.32 0.9023 Pt-NQR.2
Potri.005G078900
[exp]
10.81 0.8921
AT4G21060 Galactosyltransferase family p... Potri.006G011300
[exp]
14.69 0.8717
AT1G71070 Core-2/I-branching beta-1,6-N-... Potri.008G006500
[exp]
15.09 0.9000
AT4G14500 Polyketide cyclase/dehydrase a... Potri.010G076500
[exp]
15.19 0.8947
AT3G13275 unknown protein Potri.011G166250
[exp]
16.43 0.8879

Potri.010G212900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.