Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHI.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55120 300 / 1e-103 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) AT5G66230 239 / 2e-76 Chalcone-flavanone isomerase family protein (.1.2) AT5G66220 195 / 1e-63 Chalcone-flavanone isomerase family protein (.1) AT5G05270 76 / 1e-16 Chalcone-flavanone isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057800 [exp] 84 / 1e-19 AT5G05270 270 / 6e-93 Chalcone-flavanone isomerase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003311 [exp] 311 / 8e-109 AT3G55120 274 / 8e-94 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10030310 [exp] 310 / 3e-108 AT3G55120 270 / 5e-92 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10030309 [exp] 182 / 6e-59 AT3G55120 162 / 2e-51 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10012878 [exp] 72 / 4e-15 AT5G05270 230 / 1e-76 Chalcone-flavanone isomerase family protein (.1.2) Lus10030529 [exp] 68 / 6e-14 AT5G05270 222 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [poplar] [flax] Chalcone-like PF02431 [poplar] [flax] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Potri.010G213000.3 pacid=42797518 polypeptide=Potri.010G213000.3.p locus=Potri.010G213000 ID=Potri.010G213000.3.v4.1 annot-version=v4.1 ATGTCTCCTGCAGTGCCTCTCTCCGAAATTCAAATCGAGAATGTCACGTTCCCGCCGGCGGTGAAACCTCCGGCTTCAAACAACACTCTCTTCCTCGGTG GTGCAGGGGTTAGAGGATTAGAGATTGAAGGCAAGTTCATAAAGTTCACGGCTATAGGAGTGTACTTGGAGGATAACTCCTTGCAGTCACTTGCTGCTAA ATGGAAGGGCAAGATTGCCAAGGAGTTGACGGATTCCGTCGAGTTCTTTAGAGATATTGTTAGAGGTCCCTTTGAGAAATTCATGCGGGTGACGATGATA TTGCCATTAACGGGCCTCCAATATTCGGAGAAGGTTGCGGAGAATTGTGTTAGCATTTGGAAATCTTTGGGAATTTACACCGATGCAGAAGCCAAAGCCA TTGAGAAATTTCGAGAGGTCTTCAAGGAAGAAACCTTCCCCCCTGGCTCCTCCATTCTTTTCACACTATCACCCCATGGATCATTAGCTATTAGCTTCTC AAAAGATGGGTCTGTACCAGAAATCGAGAATGCAGTGATAGAGAATAAGCTACTTTCAGAGGCTGTGCTAGAGTCAATGATTGGCAAGCACGGTGTGTCT CCTGCAGCAAAACAAAGTTTGGCTACAACATTATCAGAATTGCTGAAAGAAAGTAATGAAAATGGGAACTGA
AA sequence Show only first row Show all	>Potri.010G213000.3 pacid=42797518 polypeptide=Potri.010G213000.3.p locus=Potri.010G213000 ID=Potri.010G213000.3.v4.1 annot-version=v4.1 MSPAVPLSEIQIENVTFPPAVKPPASNNTLFLGGAGVRGLEIEGKFIKFTAIGVYLEDNSLQSLAAKWKGKIAKELTDSVEFFRDIVRGPFEKFMRVTMI LPLTGLQYSEKVAENCVSIWKSLGIYTDAEAKAIEKFREVFKEETFPPGSSILFTLSPHGSLAISFSKDGSVPEIENAVIENKLLSEAVLESMIGKHGVS PAAKQSLATTLSELLKESNENGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Potri.010G213000 [exp]	0	1	CHI.1
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	1.73	0.9074
AT5G05270			Chalcone-flavanone isomerase f...		Potri.019G057800 [exp]	4.24	0.8806
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176800 [exp]	4.58	0.8951	CHS.5
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113700 [exp]	4.89	0.8990
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150200 [exp]	5.65	0.7959
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.013G073300 [exp]	5.91	0.8856	F3H1
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.002G207672 [exp]	6.63	0.8561
AT2G47115			unknown protein		Potri.014G115200 [exp]	7.00	0.8768
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.004G030700 [exp]	10.39	0.8536	BAN.2,ANR/BAN1
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113900 [exp]	12.00	0.8743

Compare expression of checked genes

Potri.010G213000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.