Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19230 79 / 7e-18 Leucine-rich repeat (LRR) family protein (.1) AT1G51870 77 / 5e-17 protein kinase family protein (.1) AT1G51790 72 / 2e-15 Leucine-rich repeat protein kinase family protein (.1) AT1G51860 72 / 2e-15 Leucine-rich repeat protein kinase family protein (.1) AT1G51910 72 / 3e-15 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 71 / 4e-15 Leucine-rich repeat protein kinase family protein (.1) AT1G51880 71 / 5e-15 RHS6 root hair specific 6 (.1) AT1G49100 70 / 1e-14 Leucine-rich repeat protein kinase family protein (.1) AT3G46330 69 / 2e-14 MEE39 maternal effect embryo arrest 39, Leucine-rich repeat protein kinase family protein (.1) AT1G05700 69 / 3e-14 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G030866 [exp] 90 / 5e-22 AT3G46280 183 / 2e-53 protein kinase-related (.1) Potri.013G030800 [exp] 90 / 1e-21 AT2G19210 224 / 2e-63 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.005G043700 [exp] 85 / 5e-20 AT3G46280 216 / 3e-63 protein kinase-related (.1) Potri.013G030100 [exp] 81 / 2e-18 AT1G05700 207 / 3e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.008G150200 [exp] 61 / 1e-11 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.008G181200 [exp] 56 / 8e-10 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G052800 [exp] 55 / 2e-09 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G090800 [exp] 54 / 3e-09 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G102300 [exp] 54 / 3e-09 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023463 [exp] 123 / 1e-33 AT1G05700 108 / 8e-25 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10037051 [exp] 61 / 2e-11 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 61 / 3e-11 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 58 / 2e-10 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 57 / 4e-10 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 55 / 2e-09 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 55 / 2e-09 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10038172 [exp] 55 / 2e-09 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019907 [exp] 51 / 6e-08 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10002456 [exp] 50 / 8e-08 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G213101.1 pacid=42798646 polypeptide=Potri.010G213101.1.p locus=Potri.010G213101 ID=Potri.010G213101.1.v4.1 annot-version=v4.1 ATGTTTCTGCACAAAACTCTGCGATACGTGATCCGAGCCGGGTTCTTCTATGGCAACTATGATGGACTCTCAAATCCTCCAACATTTGATCTTCATCTGA ACGGCGGAAAATGGTCTACGGTTAATACAGCTTCGAGAAGTGGGCCCATTTATCACGAGATCGTGTACAGTTTACAGAAATCAGCGATTCTTACAGTGTG CTTGGTGCAGACAAGAGATGGAGAGGTCCCTTTTATCTCTACCTTGGAGTTTATGCCACTGCCAGATGTTCTGTACCCACACTTGGATCCTAATATCTCA TTCTCTCTTCTAGTCTGGAGAGCCAACTTGGGTGGCGGCGAGGTCAGTATTATGGACGAGGTTATAGCAGAATTGTGGCAGAAGCAGGGGCACGTTGAGG CACATGGACGTGGATCATGA
AA sequence Show only first row Show all	>Potri.010G213101.1 pacid=42798646 polypeptide=Potri.010G213101.1.p locus=Potri.010G213101 ID=Potri.010G213101.1.v4.1 annot-version=v4.1 MFLHKTLRYVIRAGFFYGNYDGLSNPPTFDLHLNGGKWSTVNTASRSGPIYHEIVYSLQKSAILTVCLVQTRDGEVPFISTLEFMPLPDVLYPHLDPNIS FSLLVWRANLGGGEVSIMDEVIAELWQKQGHVEAHGRGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19230			Leucine-rich repeat (LRR) fami...		Potri.010G213101 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G071000 [exp]	3.46	0.9685
					Potri.010G219950 [exp]	6.48	0.9706
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.009G082700 [exp]	8.66	0.9698
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G070900 [exp]	8.66	0.9553
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G070000 [exp]	15.74	0.9112
					Potri.010G139766 [exp]	18.65	0.9590
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.018G151400 [exp]	19.00	0.9500
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G109800 [exp]	27.11	0.9479
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	27.82	0.9520
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.012G049101 [exp]	28.72	0.9442

Compare expression of checked genes

Potri.010G213101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.