Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28060 652 / 0 Pre-mRNA-splicing factor 3 (.1) AT3G55930 300 / 5e-93 Pre-mRNA-splicing factor 3 (.1) AT3G56790 63 / 8e-11 RNA splicing factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048000 [exp] 879 / 0 AT1G28060 652 / 0.0 Pre-mRNA-splicing factor 3 (.1) Potri.008G016200 [exp] 98 / 1e-23 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023464 [exp] 795 / 0 AT1G28060 743 / 0.0 Pre-mRNA-splicing factor 3 (.1) Lus10040340 [exp] 773 / 0 AT1G28060 751 / 0.0 Pre-mRNA-splicing factor 3 (.1) Lus10031931 [exp] 88 / 3e-19 AT3G55930 71 / 5e-14 Pre-mRNA-splicing factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0622 [poplar] [flax] Acylphosphatase PF06544 [poplar] [flax] DUF1115 Protein of unknown function (DUF1115) CL0622 [poplar] [flax] PF08572 [poplar] [flax] PRP3 pre-mRNA processing factor 3 (PRP3)
Representative CDS sequence Show only first row Show all	>Potri.010G213300.1 pacid=42796938 polypeptide=Potri.010G213300.1.p locus=Potri.010G213300 ID=Potri.010G213300.1.v4.1 annot-version=v4.1 ATGGATCGCTCCTCCAAGCGCACCCGTGACGACCGTGACCGTGACCACCACAAACACCGATCACGAGACGATAAGCACCGAGACTCCTCCGATTCTCACC ACCACCGATCAGAGAGAGAATCTCACCATCGCGACCATCACAAATCATCTAGGCGCGATGATACTAAGCGCGAAAGATCTCGCGAGCGAGAAGAGAGTGT AGATAGGCGAGAGAGATCTCACGATCACAAATCATCTTCCTCATCGAGGCGTGAGGACAGAGAGAGATCGTATGATGCGAGAGAGGAGAGAGAAGGGAGT AGAGAGAGAAAGCGCGAGAAGAGAGAGAGAGAAATTGAAGAGGAGGATTATTTTGAGAGAAAGAAGAGAAAAGAGAGAGGAGGGAGTGAAGATAGGGTTG TTGTTGACAAGGAGAAGAGGAGTAGAAGAAGATTTGGCGAAAAAGTGAAAGAAGAGGATAATAGTATTGATACCAATAATAATGGTAATAGTTTTGAGAA TGTGAAGAGTGTGGATTTGAGTGAGGTTAGAGTGAAGGAGGAAGTGAATGGTCAGCCAACTGGTGGCGGCAGTGGCAGCACCACAGAAAACGGTGGTGTT TCGACTGCAAATTTAATTGTTCCATATCTGCAGGGTGCTACTCTGGCAACTTTCACCAAGACACCAAGCAATTTGCCTGAGACCTCTGTGGCCCCTGTCC ACCCCCTTCCTACCAAGGTATCTTCAATTTCAAACACAAATGAAAATAAGGGAGTTAGTATTGCCAGATCTCATGAGGTTCCTGGAAAATCTAGTACAGA TGGGACAACTTCAGCTGCTGGGAAAAGTGGAAATCTATCACTTGATGCTTTAGCGAAAGCTAAGAAAGCCTTACAAATGCAGAAGGAACTGTCAGAGAAG CTGAAGAAGCTACCCCTGTCGAGTAAGGGTAATAAAAGTTCAGGTGGTAGCTTACAAGGTCCATTGTCATCAGCAACCATTACTACTGCTGTTTCAGTAG AGGCAATGCCAAGTTCATCCACCTCATCTACTAGTACTATGGTGTCTGTAAAGCCACCTGCAACTGGCATGGCACCTCCGCCTGATATTACTAGCATGCC CAATTATGAAGCTGTTAAACGTGCCCAGGAACTCGCTGCTAAAATGGGATTTCGCCAGGACCCTGAGTTTGCTCCTCTTATAAACTTTTTCCCTGGTCAG TTGCCAGCAGAAGTCTCTGCGCTGCAGAAACCTTCTAAGGCCCCTGTTCTTCGTGTGGATGCACTTGGTAGGGAAATAGATGAACATGGAAATGTGGTGA ATGTGACTAAACCAAACAACCTCAGCACCCTAAAGGTCAACATCAACAAGCAGAAAAAGGAAGCATTCCAGATTCTTAAACCTGAATTGGATGTGGATCC TGAATCAAATCCTTATTTTGATGCAAAAATGGGAATTAATAAGAATAAATTCTTGAGACCCAAACGGATGACTTTCCAGTTTGTAGAGGAAGGCAAGTGG TTAAAAGAAGCTGAAATAATGAAACTGAGGAATCAATTTGGAGAAGAAAGAGAAAAGGATATGAAGGCAAGGCAAGCATTACATGCGAAGGCAAAGGCAG CTCCTGATATAAATCCTAATTTGATAGAGGTATCAGAGCGAGTTACAACCAAAGCAAAGCCTAAGGATCCAATTCCTGATATTGAGTGGTGGGATGTACC TCTGTTGACTAGTGGGACTTATGGTGAGGATGTTGATGATCTCAAGACCCAGCGTAGATTGAAAATGGAGAAAATTACTATCTATGTGGAGCACCCACGT CCAATTGAGCCCCCGGCTGAGCCAGCTCCTCCCCCACCTCAACCTTTGAAGCTAACTAAGAAGGAGCAGAAGAAGCTCCGTACACAGCGTCGCCTTGCTC GGGAAAAAGATAAACAGGAGATGATTAGACAAGGCTTGATTGAACCTCCAAAACCAAAGGTTAAGATGAGCAATCTAATGAAAGTTCTTGGCTCTGAAGC AACACAAGATCCAACTAGACTTGAAAAGGAAATTCGTACTGCAGCTGCTGAACGTGAACAAGCACATATTGATCGTAATACTGCACGTAAGCTCACTCCC GCTGAGCGTCGTGAAAAGAAGGAGAGAAAGCTCTTTGATGACCCAAATACTGTGGAAACTATTGTTTCTATTTACAGAATCAACGATCTTTCAGACAAGA AAACTCGCTTCAAAGTTGATGTCAATGCTCACGAGAATCGCTTGACTGGATGCACGGTGATTACAGAGGGAATTTGTGTGGTGGTTGTTGAAGGGGGGAG CAAATCCATCAAAAGATATGGAAAACTAATGCTTAGGCGTATAAACTGGGCTGAAGCTGTAAATGAGGATGAAGGAGGTGACAATGACGAGAAACCTATG AACAAATGTGTGCTAGTGTGGCAAGGTAGTGTTGCCAAACCTAACTTCCACAGGTTTTCTTTGCATGAGTGTGTGACTGAAGCTGCAGCCCGAAAATATT TTGCTGATGCTGGTGTTGCCCACTATTGGGATCTTGCTGTCAATTTCTCCGAAGATCAAATGTGA
AA sequence Show only first row Show all	>Potri.010G213300.1 pacid=42796938 polypeptide=Potri.010G213300.1.p locus=Potri.010G213300 ID=Potri.010G213300.1.v4.1 annot-version=v4.1 MDRSSKRTRDDRDRDHHKHRSRDDKHRDSSDSHHHRSERESHHRDHHKSSRRDDTKRERSREREESVDRRERSHDHKSSSSSRREDRERSYDAREEREGS RERKREKREREIEEEDYFERKKRKERGGSEDRVVVDKEKRSRRRFGEKVKEEDNSIDTNNNGNSFENVKSVDLSEVRVKEEVNGQPTGGGSGSTTENGGV STANLIVPYLQGATLATFTKTPSNLPETSVAPVHPLPTKVSSISNTNENKGVSIARSHEVPGKSSTDGTTSAAGKSGNLSLDALAKAKKALQMQKELSEK LKKLPLSSKGNKSSGGSLQGPLSSATITTAVSVEAMPSSSTSSTSTMVSVKPPATGMAPPPDITSMPNYEAVKRAQELAAKMGFRQDPEFAPLINFFPGQ LPAEVSALQKPSKAPVLRVDALGREIDEHGNVVNVTKPNNLSTLKVNINKQKKEAFQILKPELDVDPESNPYFDAKMGINKNKFLRPKRMTFQFVEEGKW LKEAEIMKLRNQFGEEREKDMKARQALHAKAKAAPDINPNLIEVSERVTTKAKPKDPIPDIEWWDVPLLTSGTYGEDVDDLKTQRRLKMEKITIYVEHPR PIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDKQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRTAAAEREQAHIDRNTARKLTP AERREKKERKLFDDPNTVETIVSIYRINDLSDKKTRFKVDVNAHENRLTGCTVITEGICVVVVEGGSKSIKRYGKLMLRRINWAEAVNEDEGGDNDEKPM NKCVLVWQGSVAKPNFHRFSLHECVTEAAARKYFADAGVAHYWDLAVNFSEDQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	0	1
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	1.00	0.9031
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.004G194200 [exp]	4.00	0.8043
AT5G58020			unknown protein		Potri.006G186900 [exp]	4.47	0.8263
AT5G62030			diphthamide synthesis DPH2 fam...		Potri.019G041300 [exp]	6.16	0.8525
AT5G41770			crooked neck protein, putative...		Potri.003G137200 [exp]	6.32	0.8134
AT5G04670			Enhancer of polycomb-like tran...		Potri.010G235900 [exp]	7.14	0.8027
AT3G49601			unknown protein		Potri.006G233000 [exp]	9.64	0.8323
AT5G65540			unknown protein		Potri.007G011800 [exp]	10.24	0.8056
AT2G25320			TRAF-like family protein (.1)		Potri.006G256400 [exp]	10.81	0.8072
AT2G15980			Tetratricopeptide repeat (TPR)...		Potri.004G149400 [exp]	12.96	0.7923

Compare expression of checked genes

Potri.010G213300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.