Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55090 1014 / 0 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT5G13580 996 / 0 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT2G39350 989 / 0 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT2G37360 945 / 0 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G53510 900 / 0 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT3G55110 880 / 0 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55130 850 / 0 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55100 826 / 0 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT2G13610 335 / 5e-105 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G53270 321 / 3e-100 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047900 [exp] 1331 / 0 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 1007 / 0 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 991 / 0 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 951 / 0 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 339 / 9e-107 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 339 / 1e-106 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 335 / 2e-104 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 328 / 4e-102 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 327 / 5e-102 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023465 [exp] 1155 / 0 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 936 / 0 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10030306 [exp] 576 / 0 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10001972 [exp] 426 / 2e-145 AT5G13580 430 / 7e-148 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10030307 [exp] 402 / 4e-135 AT2G37360 366 / 9e-122 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 414 / 2e-134 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 406 / 2e-131 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 294 / 2e-89 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 293 / 3e-89 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 290 / 1e-87 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.010G213400.3 pacid=42797244 polypeptide=Potri.010G213400.3.p locus=Potri.010G213400 ID=Potri.010G213400.3.v4.1 annot-version=v4.1 ATGTCCCGGGTTGTAGCAGAAAATTACTCGCCTAGTCGAGATTCCTTTACAGTGCCGTTTTACACAATGGACTTCACTAATAACCACCTCCAGCCACCAT TATCCGCCTCATCTGCCTCCGGGGCTTCGCCGACTCTGGGACAGATGCTAAAACGCGTCGGAGATGTCAGCCGTGAAGCCACCGGAGATGGAAGCGAGAC CCCGGTGCACCAAGTCCTCGAGCTTGGAAGCACGAATCTTGAGGTTCCGCGATCGATTCCATTCGTTCTCTCCTTCAACAAACTCACTTACAGCGTCAAA GTTCGCCGTAAATTTAAATTTCCGGCTATCCTCCCCAGCAGGAATATCCACCGCCTCGGCCCCGCCACTGATACCGATCCTGTCGGAGGCGAAAGCCTCT TCACCACTACAAAGACTCTCCTGAATGATATCTCCGGCGAGGCACGTGATGGCGAGATTCTGGCTGTACTCGGCGCGAGTGGATCCGGAAAATCAACACT CATTGACGCCCTCGCGAATCGAATCGCGAAAGGAAGCTTGAAAGGCACGAAGACGCTAAACGGCGAGGTTTTGGAGTCTAGAATGTTGAAGGTGATATCA GCTTACGTCATGCAAGACGATTTGCTATTTCCAATGCTAACAGTGGAAGAAACACTAATGTTCGCGGCGGAGTTTCGGTTGCCGAGGAGTTTGTCTAAAT CGAAAAAGCGGCTGCGCGTGCAAGCACTAATTGAACAGTTAGGGCTTAAAAACGCGGCAAAAACCGTTATTGGTGATGAAGGCCATCGAGGTGTAAGTGG AGGAGAACGACGTCGTGTCTCAATTGGGATTGATATAATTCACGATCCAATTATCCTTTTTCTTGATGAGCCAACGTCCGGTTTGGATTCAACAAGTGCG TTTATGGTGGTTAAAGTTTTGCAAAGGATAGCACAGAGCGGGAGTATTGTGATTATGTCAGTGCACCAGCCAAGTTATCGAATTCTTGGGTTGTTAGACC GGTTGATATTTTTATCGCGTGGACAAACTGTTTATAGTGGTTCACCGATGAATTTGCCGGTTTACTTCTCGGACTTCGGGCATCCGATACCAGAGAATGA GAACCGGACGGAGTTTGCTTTGGATTTGATTAGAGAGCTTGAAGGGTCACCAGGAGGGACTAGGAGTTTGGTGGAGTTTAATAAATCATGGCAGGATCTG AAGCATTCAAGAAATGGAGGGAGTGAACCGGACCGGGGTGGGTTGTCACTTAAAGAAGCTATTAGTGCTTCCATTTCTAAAGGGAAGTTGGTGTCTGGTG CTACTAATAATGATGCTATAAGTCCAAATTCAATGGTGCCAACTTTTGCAAATTCAGTTTTGATAGAAATGGCAGTGTTGTCGAAAAGGTCGTTCTTAAA TTCACGAAGAATGCCGGAATTGTTCGGGATTCGATTGGGTGCTGTCATGGTTACTGGGTTTATTTTAGCTACGATGTTTTGGCAGCTTGACAATTCACCA AAAGGAGTGCAAGAGCGATTAGGGTTTTTCGCTTTTGCCATGTCGACAACTTTCTACACTTGTGCTGATGCTCTTCCAGTTTTTCTTCAAGAAAGGTATA TTTTCATGAGAGAAACTGCGTATAATGCTTATAGAAGATCATCTTATGTGTTATCTCATGGGCTTGTTGTTTTACCATCGTTGATTTTCTTGTCGTTGGC ATTTTCTGCGACGACGTTTTGGGCTGTTGGGCTAGATGGTGGTCTTTCAGGGTTCTTGTTTTACTTTTTGATAATCTTTGCTTCATTTTGGGCTGGAAGT TCATTCGTGACATTTCTGTCTGGTGTGGTGCCTCATGTCATGCTTGGTTATACCATAGTTGTGGCTATTTTGGCATACTTCCTGCTTTTCAGTGGGTTCT TTATCAATCGTGATCGAATCCCTGCCTACTGGATATGGTTTCACTACTTGTCACTGGTGAAATACCCTTATGAAGCTGTTTTGCTAAATGAATTTCAAGA TCCAGCCAAGTGTTTTGTGAGGGGTGTTCAGATTTTCGACCAAAGTCCACTTGGGGAAGTATCCACATCACTGAAACTTCAACTGCTGGAATCAATGAGC AATACACTGGGAACGAAGATCACTAGCTCCACATGCTTGACTACTGGGGCCGACATATTGCTGCAACAAGGGATTACAGATTTGAGCAAGTGGAATTGCC TGTGGGTCACCGTGGCGTGGGGGTTCCTGTTTAGGATTCTCTTTTACATATCTTTGTTGTTTGGAAGCAAGAACAAGAGAAGGTGA
AA sequence Show only first row Show all	>Potri.010G213400.3 pacid=42797244 polypeptide=Potri.010G213400.3.p locus=Potri.010G213400 ID=Potri.010G213400.3.v4.1 annot-version=v4.1 MSRVVAENYSPSRDSFTVPFYTMDFTNNHLQPPLSASSASGASPTLGQMLKRVGDVSREATGDGSETPVHQVLELGSTNLEVPRSIPFVLSFNKLTYSVK VRRKFKFPAILPSRNIHRLGPATDTDPVGGESLFTTTKTLLNDISGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGTKTLNGEVLESRMLKVIS AYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKRLRVQALIEQLGLKNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSA FMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRLIFLSRGQTVYSGSPMNLPVYFSDFGHPIPENENRTEFALDLIRELEGSPGGTRSLVEFNKSWQDL KHSRNGGSEPDRGGLSLKEAISASISKGKLVSGATNNDAISPNSMVPTFANSVLIEMAVLSKRSFLNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSP KGVQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHGLVVLPSLIFLSLAFSATTFWAVGLDGGLSGFLFYFLIIFASFWAGS SFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPAYWIWFHYLSLVKYPYEAVLLNEFQDPAKCFVRGVQIFDQSPLGEVSTSLKLQLLESMS NTLGTKITSSTCLTTGADILLQQGITDLSKWNCLWVTVAWGFLFRILFYISLLFGSKNKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Potri.010G213400 [exp]	0	1	2
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	1.00	0.9760
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G089000 [exp]	13.92	0.9535
AT1G30700			FAD-binding Berberine family p...		Potri.001G462300 [exp]	14.89	0.9588
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.006G205500 [exp]	15.42	0.9753
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Potri.002G141400 [exp]	16.06	0.9564	CHSL4
AT2G01505		CLE16	CLAVATA3/ESR-RELATED 16 (.1)		Potri.008G130800 [exp]	17.66	0.9751
AT1G05510			Protein of unknown function (D...		Potri.014G148050 [exp]	18.81	0.9481
					Potri.015G054900 [exp]	20.19	0.9751
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G053500 [exp]	21.26	0.9495
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116900 [exp]	22.71	0.9441

Compare expression of checked genes

Potri.010G213400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.