Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39340 845 / 0 AtSAC3A yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT3G06290 55 / 4e-07 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT3G54380 50 / 6e-06 AtSAC3C yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047700 [exp] 1390 / 0 AT2G39340 880 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.010G028200 [exp] 56 / 1e-07 AT3G06290 1155 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.001G035700 [exp] 52 / 2e-06 AT3G54380 457 / 3e-160 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030305 [exp] 1036 / 0 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 982 / 0 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10034008 [exp] 59 / 3e-08 AT3G06290 1093 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10012769 [exp] 59 / 3e-08 AT3G06290 1033 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10024110 [exp] 51 / 5e-06 AT3G54380 412 / 1e-142 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Lus10041609 [exp] 45 / 0.0002 AT3G54380 429 / 3e-149 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF10075 [poplar] [flax] CSN8_PSD8_EIF3K CSN8/PSMD8/EIF3K family
Representative CDS sequence Show only first row Show all	>Potri.010G213700.3 pacid=42797023 polypeptide=Potri.010G213700.3.p locus=Potri.010G213700 ID=Potri.010G213700.3.v4.1 annot-version=v4.1 ATGATGATGATGAATCAAGGAGTCAATGCGCAAACCATAGCTTCGGTGGACCCTAATTTACTCGAGGGTCGATATGTTGTTGATGCGAACCAAGGGAAGA AATCTTATATTCCCTCAGTTAATGGATCTGAAACTGCACCATGGACCACGCATAGAGTGGATAATCACTCCACAGAGAATGGAATCCTTTCAAATTCCAG TTATCACCATGATCAGCAAACACAGCAGCCTGCAAGAAATGCTCAAGATAGTTTGAGCACGACATCCCTTTCTAGTTCATCGACTCAAGGAACAACAAAT GGAGTGCAACAAGATTACAGTAGTTATGCAGCATACAACCCTACAGATCCATATGGAAGCACTGGATATTCAACAAGTTACTATAATAATGGTTATCAGC AGCAAACCAACCATTCATACTCTCAGCAACAACCAAACCATTCATACTCTCAGCAGCAACCTAGCCATTCATACTCTCAGCAGCAACAACCTAGCCATTC ATACTCTCAGCAGCAGCAACCTAGCCATTCATACTCTCAGCAGCAACAACCTAGCCATTCTTACTCGTCGACTGTAGGAGCATATCAAAACACAGGTGCT CCTTATCAGCCTCTTTCCTCATTTCAGAATACAGGGTCTTATACTGGGACAACAAGTTATTCAACCACTTACTACAATCCTGGTGATTATCAGACAGCCG GAGGTTACCCAAGCAGTGGATACAATAATCATACTACCTTGTGGAACGATCCCAATTATGCAAATTATACATCTCAACAGTATTCAACCTATGCTCCAGA CACAACAAGTGCTTATAGTTCCGGTACTGCAGCTTCAACATCAATGAACAATGAGCAGCGCTACAAGCAATGGGCTGATTATTACAGTCAAACAGAAGTT ATTTGTGCTCCCGGGACAGAACACCTGTCTGCTGCTAGCACATCTAACCAGGGAAGTGCCGTGTCTGGTGTGTATCCTACTTCCAGCACCCAGCCTCCCT CATCTTTCACCCCGACATCTCAGAGGACTGAATCTGCGTCTTCTGATTTGCCTTCTTTGCAGACCAGTGCAACTATCAGTAGTGCTCATGATGGCTGGAA ACAAGGGGCTCCAAGTTTTCAAATTCACCATGCTAGTCCTACGCAACCACACTTTCAATATTCTCTTGATTCAAAAGCTTCATATGATAATTTTCAGGAA CAACAACAGACTGCTCATCAAGGTCCTAATTCACAATTTCCTGCTGCTCATCAGGTGACCCAGAGTTATCAATCACCTCTGCCAAATGCTCCATCTTTAG ATACTCGAAGGGTAAACATGATGCAGATTCCAACAAATCCTAGAATTGCTTCAAATTTAGCTTTGGGCTTATCGAAAACCGATAAGGATGGCTCTGTGAC CAATGCAGCAGCAAAACCTGCTTATATTAGTGTGTCAATGCCAAAGCCAAACAACAAAGTGTTGTCCAATGACACAACTATTTCCATGCTTAAGCCTGGA ATGTTCCCCAAGTCACTGTGTCATTATGTTGAAAGGGCTTTCGATCTCTGTAAAGATGACACACAAAGGGTAGCTTGTCAGGCTATCATGAAGGAGATCA TCACGAAGGCAACTGCCAATGGTACACTTAACACTCTAGACTGGGATGCGGAGCCTCTTTTTGCAATACCAAATTCTGAGGCTGTCAATGTGGAGAGTTC ACAATATTCCACTCCTGTTTCTTCAGTACCGAAGTATAAAAGGAGTCCAAGCAGACGATCTAAAAGTAGGTGGGAGCCTTTACCAGAAGAGAAATCAGTA GACAAATCTGTTTCCACCAGTAATGATATTGTAAAATATGGTGGTTGGGACAGAAAGGCTCCTAGTGTGAATTCCGAGAGCAAGGAGAATGCTGTGAATA ATGTGAAGTTTTCTTTATCGGAGCAGAAACGTCCAAGCAAAAATAATCAGAGGCCAGTTAAGAGGCAACATCTTGCTGATGGTTTGGATGCTGCTTATAA CGATGCATCAAGTGACAGTGATAAGGAGCAAGGTTTAACTGCTTATTATTCTAGTGCAATATCAATTGCCAATACACCAGAGGAAAAAAAGAGACGTGAG AGTCGCTCTAAGAGATTTGAAAAGGGACAAGGATATCGAACTGAAGTTAATTATTTCAAACCAAAAAATGCTGGTGCTGGGAACTTGTACAGTCGGCGGG CGAGTGCATCGATGCTTAGCAAAAGCTTTGATGACAGTGGAAGCAAAGCTGTTGAAGACATTGATTGGGATGCACTAACTGTCAAGGGTACCTGCCAAGA AATTGAGAAACGTTATCTGCGCCTTACTTCTGCACCTGATCCCTCCACTGTGAGACCAGAAGAAGTGCTAGAAAAGGCTCTGCTTATGGTTCAGAATTCT CAAAAGAACTACCTTTATAAATGCGATCAATTAAAATCTATTCGTCAAGATCTAACTGTACAACGAATACAGAATCAGCTGACAGTTAAGGTGTATGAAA CGCATGCTCGATTAGCACTGGAAGCAGGGGACTTGCCCGAGTATAATCAGTGTCAATCCCAGTTGAAAACCCTCTATGCTGAAGGAATTGAAGGACGTCA TATGGAGTTTGCAGCTTATAACTTACTGTGTGTTATATTGCACTCGAATAACAATAGAGATCTTGTATCATCGATGTCAAGATTAACCGAGGGAACAAAG AAGGATAAAGCTGTTAAACATGCTCTTGCAGTTCGTGCAGCTGTCACTTCAGGAAACTATGTAATGTTCTTCAGACTTTATAAGGAGGCACCTAACTTGA ACACTTGCCTTATGGATCTCTATGTTGAAAAGATGCGGTACAAGGCTGTGAGTTGCATGTCCTGGTCATATCGCCCTACAATACCAGTTTCTTACATTGC ACAGGTTCTGGGCTTCTCTAGTGCGAGTGATGGGAATGATGAGAAGGACTCAGATGGGTCAGGATTAGAGGAGTGTGTGGAATGGATGAAGGCCCACGGT GCTTGCCTTACCACAGATAACAATGGAGAGATGCAGCTTGATACAAAGGCTTCATCTTCCAGTCTATATATGCCAGAACCTGAAGATGCTGTGGCCCATG GAGACGCTAACCTGGCTGTTAATGATTTTCTGACACGGACATCCTTGTAG
AA sequence Show only first row Show all	>Potri.010G213700.3 pacid=42797023 polypeptide=Potri.010G213700.3.p locus=Potri.010G213700 ID=Potri.010G213700.3.v4.1 annot-version=v4.1 MMMMNQGVNAQTIASVDPNLLEGRYVVDANQGKKSYIPSVNGSETAPWTTHRVDNHSTENGILSNSSYHHDQQTQQPARNAQDSLSTTSLSSSSTQGTTN GVQQDYSSYAAYNPTDPYGSTGYSTSYYNNGYQQQTNHSYSQQQPNHSYSQQQPSHSYSQQQQPSHSYSQQQQPSHSYSQQQQPSHSYSSTVGAYQNTGA PYQPLSSFQNTGSYTGTTSYSTTYYNPGDYQTAGGYPSSGYNNHTTLWNDPNYANYTSQQYSTYAPDTTSAYSSGTAASTSMNNEQRYKQWADYYSQTEV ICAPGTEHLSAASTSNQGSAVSGVYPTSSTQPPSSFTPTSQRTESASSDLPSLQTSATISSAHDGWKQGAPSFQIHHASPTQPHFQYSLDSKASYDNFQE QQQTAHQGPNSQFPAAHQVTQSYQSPLPNAPSLDTRRVNMMQIPTNPRIASNLALGLSKTDKDGSVTNAAAKPAYISVSMPKPNNKVLSNDTTISMLKPG MFPKSLCHYVERAFDLCKDDTQRVACQAIMKEIITKATANGTLNTLDWDAEPLFAIPNSEAVNVESSQYSTPVSSVPKYKRSPSRRSKSRWEPLPEEKSV DKSVSTSNDIVKYGGWDRKAPSVNSESKENAVNNVKFSLSEQKRPSKNNQRPVKRQHLADGLDAAYNDASSDSDKEQGLTAYYSSAISIANTPEEKKRRE SRSKRFEKGQGYRTEVNYFKPKNAGAGNLYSRRASASMLSKSFDDSGSKAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALLMVQNS QKNYLYKCDQLKSIRQDLTVQRIQNQLTVKVYETHARLALEAGDLPEYNQCQSQLKTLYAEGIEGRHMEFAAYNLLCVILHSNNNRDLVSSMSRLTEGTK KDKAVKHALAVRAAVTSGNYVMFFRLYKEAPNLNTCLMDLYVEKMRYKAVSCMSWSYRPTIPVSYIAQVLGFSSASDGNDEKDSDGSGLEECVEWMKAHG ACLTTDNNGEMQLDTKASSSSLYMPEPEDAVAHGDANLAVNDFLTRTSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	0	1
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	1.00	0.9130
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	3.60	0.8474
AT2G19390			unknown protein		Potri.006G146600 [exp]	4.24	0.8856
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.002G141300 [exp]	5.91	0.8826
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	6.32	0.8848
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	7.34	0.8703
AT5G49960			unknown protein		Potri.013G128100 [exp]	7.34	0.8379
AT3G13225			WW domain-containing protein (...		Potri.001G371600 [exp]	7.93	0.8317
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.005G048900 [exp]	9.38	0.8310	XRN4.1
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	10.53	0.8171

Compare expression of checked genes

Potri.010G213700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.