Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55060 675 / 0 unknown protein AT2G39300 582 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047200 [exp] 1369 / 0 AT3G55060 637 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001974 [exp] 842 / 0 AT3G55060 655 / 0.0 unknown protein Lus10030304 [exp] 691 / 0 AT3G55060 595 / 0.0 unknown protein Lus10019883 [exp] 65 / 3e-11 AT2G39300 56 / 8e-09 unknown protein Lus10014034 [exp] 65 / 3e-11 AT2G39300 78 / 4e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G214300.2 pacid=42799215 polypeptide=Potri.010G214300.2.p locus=Potri.010G214300 ID=Potri.010G214300.2.v4.1 annot-version=v4.1 ATGAAGAAACTATTCTTTTTTAGATCTTCTTCCTCCAATGATGGAAACAACAATACCAGTTCTCCACTGTCAGCAGATAAGCAAGTTTATTGGGAGGCAC CATTGGAAGGCAAACCAAACAATCAAGATAATGATAATGCTCAGTGTAATTTTTGGAGCCCCAGGGGACTATTTTCAAAATCTGGAAAGCAAACATATGA TAGCCAGATCCCAAGCAACAGTTCGGGTCTTAGAAGGAGCCGCTCGTTGTCATCAGCTGCCTTTCTTGATGATGGGATGGGCCAGATGAATTTTTCTTGT ACAAATGATGAAACAATATCTTCTTCTAGCAGTTCCAGTGGTGCTCATCAGCAACGTGATCACTCATCTCGTAGGCGCAATCTTACTCCTGAGAGGCGAG CCAAGACAAAGCGATTTGAAGTGGCAGCTACTGGACTAGAGAGATCTGGTCATTCCAAATCTCATTATGATTCGTCAGGAAATTCTTCTTCTAGTAATGT CTCAAGTAAAATTGTGGATCGCTACATTGATGGAGAACAGGAGCAGGAAATGAGCAAGCCCAAACACTGTTCACAGAGAAATTTTACTGGAAGTGGAAAT GCTGGTGGAAGACTTCCTCCACGAGTTCAATACACAGCCCCTGCTTCACCAGCAGATAACATCAAAGATAAGCCCAGGTCTCACTCATTTCGGGAATTTA GAGGGGCTCGACAGAAGTTTTCTTCAAGAAATTGGGTGGATAAGGGATTTGGCCATGAATCTCCACAGAAACTTGCAAGGAATGTCATGGAGAGGCTCTC CCAGGCTCGTGCTTATCCAAAATCAAGTTCTAAGAAGTATGACCGTGACATTCCTATCACAATTGAAGATGTCTACGGTGGATCAACGAATTCATACATG GATGTTCCTGCCCGAAAAAGCTACTCATTGGAGGAACCTTGTGAAACCATTAACGGTTACAATGGTGATGATTTCTCAGGCTTTCAGAAGCAAAATTACT TCCTTGGAGATGATTTTGGGGATATGAACTCTGTTGGTAGTGATGACATGGTAGATGTTGAACTACAACGAAGATCTAAAGAAGCTGAGGAGAGGATTGC CCTTCTTTCTGAAGAGCTTGAGCAGGAAAGCTTTCTCCAAGATAGTGGATTTGATGTTCCACCATTGATGCAAACTATTCAAAGCTTAATAGAGGATAAG ATAAGCTTGGCAATTGAAGTTTCAGGTCTTCTGAAATCTCGAATTGCTGACAGGGATTCTGCCAAGGAAGGTTTTCGATTAGCAAAGGCAGAATGGGAGG CAAGGAACCGAAGATTAGAGAAGGAGAAGAGTGAATTGCAGACAGCTCTGGAGAAAGAATTAGACAGAAGGTCGAGTGACTGGTCATCAAAGCTTGAGAA ATACCAGCTAGAAGAGCAAAGGCTTCGTGAACGGGTTAGGGAGCTTGCAGAGCATAACGTTTCACTCCAGAGGGAAGTATCTTCTTTTAGTGAGCGGGAA GCGGAAAACAAAAGTGTGATAACATATTCCGAGCAACAACTCAGGCACCTGACTTCAAAGGTGGAGGAAGTGAGTGATGAGAATCAAGATCTGAAACACA ATCTTTCTGAGCTGCAAAACAAGTATGCAGTGGCAGAAGAAGATTTAGATTGTATTAAAAGGAATTTTGAAGAGAAGAACAAGGAGTGCAAGGATTTGCA TAAATCCATAACAAGATTATTAAGAACCTGCAGCGATCAAGAGAGGACGATTGGGGGGTTGCGGGAAAAATTTAGTGAGGATATTGAGAAGAAGACATCA TTTGACAAGTTTGATAAGCATGTGACACAAATGCAAATGGAGCAAATGAGGTTGACAGGAGTTGAACTGACTCTCAGGAGGGAGGTGGAATCTTGTAGGC ATGAAATTGATTCCCTTCGACATGAGAATATAAACTTACTGAAGCGCTTAAAGGGTAATGGTGAAGAGGTTGGTGCTTTAACTTTCAAGCTAGATAAGGA AATGTGGACACGTGTTTGCTGCCTGCAAAATCAAGGATTGTCTTTGTTAAATGAGAGCATCCAGCTTTCTGCTAAGTTAATGGAATACATCAAAGGGAAA ATGGGCCACTTTCAAGAATTTAAGCAGGGTATGGAAGTTTTGGGGAATGGTTTAGATGGGCAGTTTATTGTTGAATCTGATATGAAAGTTCAGGGCTTTA AGCGTGGAACTGAAAGCCTAACAAGGAGTTTGCAGACAATATCTTCTTTACTTCAGGAGAAGTCCAATCCTGGTGCTTCAAAATCTCATTCCCCAAGCAG TAATTTCGATGGCTCTGAGAAACTTAATCATACTCCAGAGGAATCGTTGAGATTCGAGCTTAAAGCTGAAGCTTTGCTTACAAGTCTGTTAAGAGAGAAG CTGTACTTCAAAGAGTCGGAGGTCGAGCAGTTGCAAGCTGAAATAGCAGCAGCAGTGAGAGGCAACGACATCCTCCGATGTGAAGTCGGGAATGCACTGG ATAACCTTGCTTGTGTCTCTCATCAGCTGAAAAATCTTGACCTTCAGATGCTGAAGAAGGATGAGAATGTAGATCGGCTACGAAGTGACCTCCAAGCATC CGTGAAGGAATTAACAATGATTAGGGGGGTATTGGCCAAAGTTTCACAGGAGAGAGATATGATGTGGGAGGAAGTGAAGCAGTACAAAGAGCAGGATATG CTATTGAATTCAGAGATTAATGTATTGAAGAAGAAGATAGAGGCCCTAGATGAAGATAGTCTTCTTAAAGAAGGTCAGATCACAATCTTGAAAGACACCC TAGGTAGCAGGCCTTTTGATCTCCTTGGCAGTCCTAGTTGTACACGAGAATTCTTGCTAGAATGA
AA sequence Show only first row Show all	>Potri.010G214300.2 pacid=42799215 polypeptide=Potri.010G214300.2.p locus=Potri.010G214300 ID=Potri.010G214300.2.v4.1 annot-version=v4.1 MKKLFFFRSSSSNDGNNNTSSPLSADKQVYWEAPLEGKPNNQDNDNAQCNFWSPRGLFSKSGKQTYDSQIPSNSSGLRRSRSLSSAAFLDDGMGQMNFSC TNDETISSSSSSSGAHQQRDHSSRRRNLTPERRAKTKRFEVAATGLERSGHSKSHYDSSGNSSSSNVSSKIVDRYIDGEQEQEMSKPKHCSQRNFTGSGN AGGRLPPRVQYTAPASPADNIKDKPRSHSFREFRGARQKFSSRNWVDKGFGHESPQKLARNVMERLSQARAYPKSSSKKYDRDIPITIEDVYGGSTNSYM DVPARKSYSLEEPCETINGYNGDDFSGFQKQNYFLGDDFGDMNSVGSDDMVDVELQRRSKEAEERIALLSEELEQESFLQDSGFDVPPLMQTIQSLIEDK ISLAIEVSGLLKSRIADRDSAKEGFRLAKAEWEARNRRLEKEKSELQTALEKELDRRSSDWSSKLEKYQLEEQRLRERVRELAEHNVSLQREVSSFSERE AENKSVITYSEQQLRHLTSKVEEVSDENQDLKHNLSELQNKYAVAEEDLDCIKRNFEEKNKECKDLHKSITRLLRTCSDQERTIGGLREKFSEDIEKKTS FDKFDKHVTQMQMEQMRLTGVELTLRREVESCRHEIDSLRHENINLLKRLKGNGEEVGALTFKLDKEMWTRVCCLQNQGLSLLNESIQLSAKLMEYIKGK MGHFQEFKQGMEVLGNGLDGQFIVESDMKVQGFKRGTESLTRSLQTISSLLQEKSNPGASKSHSPSSNFDGSEKLNHTPEESLRFELKAEALLTSLLREK LYFKESEVEQLQAEIAAAVRGNDILRCEVGNALDNLACVSHQLKNLDLQMLKKDENVDRLRSDLQASVKELTMIRGVLAKVSQERDMMWEEVKQYKEQDM LLNSEINVLKKKIEALDEDSLLKEGQITILKDTLGSRPFDLLGSPSCTREFLLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55060			unknown protein		Potri.010G214300 [exp]	0	1
AT2G23450			Protein kinase superfamily pro...		Potri.002G130600 [exp]	3.00	0.9010
AT1G72250			Di-glucose binding protein wit...		Potri.011G140000 [exp]	17.94	0.8835
AT5G22930			Protein of unknown function (D...		Potri.009G006000 [exp]	23.74	0.8200
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	24.55	0.8829
AT3G18170			Glycosyltransferase family 61 ...		Potri.012G051500 [exp]	28.46	0.8611
AT4G14330			P-loop containing nucleoside t...		Potri.010G069400 [exp]	30.90	0.8692
AT2G33400			unknown protein		Potri.010G067300 [exp]	32.00	0.8724
AT3G15550			unknown protein		Potri.003G058600 [exp]	32.31	0.8663
AT4G14330			P-loop containing nucleoside t...		Potri.008G169000 [exp]	36.46	0.8657
AT3G06778			Chaperone DnaJ-domain superfam...		Potri.008G211300 [exp]	39.10	0.8058

Compare expression of checked genes

Potri.010G214300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.