Plant FIBer expression Database

Potri.010G214500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G091800
[exp]
130 / 6e-32 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003602
[exp]
50 / 5e-06 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0114 HMG-box PF00505 HMG_box HMG (high mobility group) box
Representative CDS sequence
>Potri.010G214500.2 pacid=42797167 polypeptide=Potri.010G214500.2.p locus=Potri.010G214500 ID=Potri.010G214500.2.v4.1 annot-version=v4.1
ATGGATGGTGGTGAAGATTCCCAAGAAAGTCCAAGTGTTAATGCAGCGGCTGCATCAAGTTCCGATAATGCAGAGCCAAGTGCCTCGCAGACTGGAGCAC
AACGCAATTCCCTTGAGAAATGCAAGCAGAATGCAAATGAAATAGAGGTGGACGAATCCTGCACATCAAAAAAGCGGCCTCACAACAGCTTCATTGAATA
TTACTTGAGCAAAGGATTGGATGGAGAGAGGGAAAATAGGGGGAAGAAGAAATTGAAGGCTCCAAAGAATGTCGCAAAGCAATGGAAGTCACTCCCAGAG
GAGGAGAAGAGACCATTCCAAGATGCAGTGAAAGATGCTTGGAAAAATCATGTAAAAGAGAGAGGTGAGCGCCCTGAAGCACCAAAGAAGGCATATCTTG
ATTCCCGGTGTTCGTTGAGAAAGTTTGCAGCAGTTGTCAAAATGTTTGATCAAGATCAGATTCAAGCAGTTAATGCTCTTGGACTTGCTGGGCTCTTGCA
TATTAAAAAGCAAAAAAGGAAGTTCCAAGTGATTGAAGATCTTGCTGCCAGGTTTGACATACAATCTTGTGAGTTAGAGGTTCATGGAGGGAGATTGAAA
TTAACTCCTGGTGGAGTCGAGTGGCTGTTGGGTCTGCCATCGTCTGGGCTTAGCGTGGAGCAATTTATTGGAAATGACGAGGATGTCCGCATGATGTACA
ACCTTGGTTCAGATCGAATTCATGCTGGTCAGCTAGGGGATGGTTTGGCTTCAATCCCTGCCAGTCCTGAGTTTCAAGCAAAATTCCTTCTGTATGCCAT
CTCTACTGTGATACGGCCTAGCACATCTGTATATGTCAGTCCATCATGCTTTGGCATCTTGAAAAATCTCTCAATTGTTTGCGCTCTCAATTGGGCAAAA
TATGCATTGGAGGGCCTTGTTAGTGGAATTAAGAAATATCGCGAGACCGATTTTGCGCCTAGCAAAGCTAAGCGGCTGACTGGGTGTCTTCTCATTTTAG
AGATCTTTTACTTGGAGCATGTCAATGTTGGCCAAATTAAATTACCAAGAGCAAGTGGACTAGCACCTCGGATTTGTGATTGGGATGAAGATGCCAAAAG
TCTCGTGTTTGAGAAGGTATACAAGCTTGGAGGTATGGACAGTGATAAGGTTGAACTGGTTACGAGAGGTGTTTCCGCTATGGCATCACACAGTGTTACG
GTTGCAAAGAATAAAGAACTTGCCGAATTGCGTAAAGATATGGTGAAACTTCGAGAGGATGTGATGTTTTACATGGAGAAAATGAGTGCTGACATGGCCA
GATTTAAGGAGACTGTTCTGTCTGCAATAGCTGGGAAGCAAGTGTGCCTACTTGTACCATCAGAACATATTCAACCTTCACATCCCAATGATGATAGTCG
AGAGGCTGAGCAGGAGGACGCCACTGAAGTTCCTACTGAAGCGGTACCTGAGCAAACTGTCCAGACTCCGCCTGGTCAAACGCCTACCGATGAACACTCG
CACAAGGATAAGTTAGGGGTTGTTTTGTGTTCAGGACAGCCTCGCCTCGGTGCTTTGAAGGATTCTGTTGATTCCCATGCCAAAGGGAATATTGCATCAC
ATGGAGCTGGGGAAAAAACGGTTTTGACCTTTGATTTATCAGTAGGGAGGATTGATTGTTAA
AA sequence
>Potri.010G214500.2 pacid=42797167 polypeptide=Potri.010G214500.2.p locus=Potri.010G214500 ID=Potri.010G214500.2.v4.1 annot-version=v4.1
MDGGEDSQESPSVNAAAASSSDNAEPSASQTGAQRNSLEKCKQNANEIEVDESCTSKKRPHNSFIEYYLSKGLDGERENRGKKKLKAPKNVAKQWKSLPE
EEKRPFQDAVKDAWKNHVKERGERPEAPKKAYLDSRCSLRKFAAVVKMFDQDQIQAVNALGLAGLLHIKKQKRKFQVIEDLAARFDIQSCELEVHGGRLK
LTPGGVEWLLGLPSSGLSVEQFIGNDEDVRMMYNLGSDRIHAGQLGDGLASIPASPEFQAKFLLYAISTVIRPSTSVYVSPSCFGILKNLSIVCALNWAK
YALEGLVSGIKKYRETDFAPSKAKRLTGCLLILEIFYLEHVNVGQIKLPRASGLAPRICDWDEDAKSLVFEKVYKLGGMDSDKVELVTRGVSAMASHSVT
VAKNKELAELRKDMVKLREDVMFYMEKMSADMARFKETVLSAIAGKQVCLLVPSEHIQPSHPNDDSREAEQEDATEVPTEAVPEQTVQTPPGQTPTDEHS
HKDKLGVVLCSGQPRLGALKDSVDSHAKGNIASHGAGEKTVLTFDLSVGRIDC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G214500
[exp]
0 1
AT2G01260 Protein of unknown function (D... Potri.010G120700
[exp]
4.00 0.7082
AT2G30600 BTB/POZ domain-containing prot... Potri.002G010100
[exp]
16.00 0.6728
Potri.001G149001
[exp]
19.79 0.6453
AT4G27190 NB-ARC domain-containing disea... Potri.005G042900
[exp]
22.53 0.7356 Pt-RGA-II24.67
AT4G27190 NB-ARC domain-containing disea... Potri.001G433700
[exp]
25.84 0.7195
AT2G39580 unknown protein Potri.010G208200
[exp]
28.72 0.7150
AT4G27220 NB-ARC domain-containing disea... Potri.001G426660
[exp]
30.65 0.7058
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.017G091000
[exp]
45.03 0.6306
AT1G34380 5'-3' exonuclease family prote... Potri.013G114400
[exp]
45.23 0.6853
AT1G16310 Cation efflux family protein (... Potri.010G172600
[exp]
48.71 0.6871

Potri.010G214500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.