Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08790 473 / 2e-169 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT5G12040 143 / 9e-40 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT2G27450 91 / 1e-20 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT3G44310 74 / 2e-14 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT3G44300 72 / 6e-14 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44320 72 / 8e-14 AtNIT3, NIT3 nitrilase 3 (.1) AT5G22300 56 / 9e-09 AtNIT4, NIT4 nitrilase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047100 [exp] 601 / 0 AT4G08790 465 / 3e-166 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.006G222900 [exp] 142 / 2e-39 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.004G201400 [exp] 92 / 4e-21 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.004G199600 [exp] 56 / 1e-08 AT5G22300 578 / 0.0 nitrilase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001975 [exp] 529 / 0 AT4G08790 469 / 6e-168 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10030303 [exp] 514 / 0 AT4G08790 474 / 1e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10026464 [exp] 141 / 1e-38 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10020627 [exp] 95 / 4e-22 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10004862 [exp] 82 / 3e-17 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2) Lus10005201 [exp] 64 / 2e-11 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 57 / 6e-09 AT5G22300 561 / 0.0 nitrilase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [poplar] [flax] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G214600.1 pacid=42798668 polypeptide=Potri.010G214600.1.p locus=Potri.010G214600 ID=Potri.010G214600.1.v4.1 annot-version=v4.1 ATGCCATTTTGTCTTCACAACTACCGCTTTTTCGTCAAGCTAAACAGCAACAGAACTCTTCCCTGTCCGATACGCCACGCGCGCTTCACCTCACTGACCG TTCAATCACGTGCCACCATTTCCAGCGAGCCAGCCATGGCATCCAACTCGGTCCGAGTGGCTGCAGCTCAGATGACGTCAATCAACGACCTGGCTGCCAA TTTCGCAACCTGCTCTCGCCTCGTCAAAGAAGCAGTGGCTGAAGGGGCAAAATTGGTTTGTTTCCCGGAAAGTTTTTCTTTCATTGCGGACAAGGATGGG GAAAGCGTTAACATTGCGGAGCCTTTGGATGGACCGATTATGCAACAGTATTGTTCATTGGCCAGGGAGTCCGGCATTTGGTTGTCCCTTGGAGGATTCC AAGAGAGAGGATCTGACGACGAACACTTGCGCAACACGCATGTTATCATTGATGACTGTGGGAGTATAAGAAGCAGTTATAGTAAAATACACTTGTTTGA TGTGGATGTTCCTGGTGGACGGGTATACAAGGAAAGCAGCTTTACAGAACCTGGGAAGGATATAGTTTCAGTCGACAGTCCTGTTGGACGCCTGGGTTTA TCAGTTTGCTATGATCTGAGGTTCCCAGAGTTATACCAGCAGCTCAGGTTCCAGCACGAAGCCCAGATTTTATTAGTACCTTCTGCTTTTACAAAAATAA CTGGTCAGGCGCATTGGGAGATTTTGCTTCGTGCTCGTGCAATTGAGACTCAATGCTATGTAATAGCTGCTGCACAAGCTGGAGAGCATAATGATAAAAG AGAAAGCTATGGTGACACGTTAATAATTGATCCTTGGGGAACTGTTGTTGGTCGATTGCCTGACCGCATTTCAACAGGGATTGCTGTGGCTGATATTGAT TTCTCATTGATTGATTCAGTACGAGCAAAAATACCAATCGCTAAGCAAAGAAAGCCCCTCGACTTCTGGAAAGCTACATCTTTATGA
AA sequence Show only first row Show all	>Potri.010G214600.1 pacid=42798668 polypeptide=Potri.010G214600.1.p locus=Potri.010G214600 ID=Potri.010G214600.1.v4.1 annot-version=v4.1 MPFCLHNYRFFVKLNSNRTLPCPIRHARFTSLTVQSRATISSEPAMASNSVRVAAAQMTSINDLAANFATCSRLVKEAVAEGAKLVCFPESFSFIADKDG ESVNIAEPLDGPIMQQYCSLARESGIWLSLGGFQERGSDDEHLRNTHVIIDDCGSIRSSYSKIHLFDVDVPGGRVYKESSFTEPGKDIVSVDSPVGRLGL SVCYDLRFPELYQQLRFQHEAQILLVPSAFTKITGQAHWEILLRARAIETQCYVIAAAQAGEHNDKRESYGDTLIIDPWGTVVGRLPDRISTGIAVADID FSLIDSVRAKIPIAKQRKPLDFWKATSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08790			Nitrilase/cyanide hydratase an...		Potri.010G214600 [exp]	0	1
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.001G285800 [exp]	5.56	0.8533
					Potri.010G007250 [exp]	6.48	0.8414
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.009G043900 [exp]	8.77	0.8177
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Potri.007G014200 [exp]	11.61	0.8111	HON905,HIS1.1
AT2G47390			Prolyl oligopeptidase family p...		Potri.002G196000 [exp]	13.52	0.8336
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.001G408200 [exp]	21.56	0.8321
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	24.33	0.8327
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007400 [exp]	24.81	0.8237
AT5G23850			Arabidopsis thaliana protein o...		Potri.003G125000 [exp]	30.93	0.7611
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.004G197100 [exp]	32.49	0.8245

Compare expression of checked genes

Potri.010G214600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.