Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02780 99 / 5e-26 GSTL1 glutathione transferase lambda 1 (.1.2) AT5G02790 92 / 1e-23 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT3G55040 91 / 2e-22 GSTL2 glutathione transferase lambda 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046800 [exp] 166 / 2e-51 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.016G083500 [exp] 115 / 2e-32 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.006G133500 [exp] 112 / 3e-31 AT5G02790 325 / 1e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040347 [exp] 129 / 4e-37 AT3G55040 290 / 8e-98 glutathione transferase lambda 2 (.1) Lus10003994 [exp] 100 / 2e-26 AT5G02790 324 / 5e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10015049 [exp] 98 / 1e-25 AT5G02790 322 / 3e-112 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10019895 [exp] 83 / 5e-19 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G214800.2 pacid=42797877 polypeptide=Potri.010G214800.2.p locus=Potri.010G214800 ID=Potri.010G214800.2.v4.1 annot-version=v4.1 ATGGGTAAATTCGGTGGCAACAAGAAAATTTACTTAGGTGCGAAAGAAGTTCTTTCACCAGCTCTTACTTCTAATCCAGACCCACCACCAGTTTTTTATG GAATAACAAGTTGTGCATATAGTACGTGTGTCCTTGTGCACCGCGTGCTTGGATTGCCCGGAATTGCTAGGTTATTTCGACAAGATAGGCCTGCCTGGTG CAAGGAGAAAGAGTATCCTACTATCAAGGTGCCTTCACTGGAACATAATAATGAAGTGAAAGGAGTGTCTCTTGATTTGATTAAATGTATCGACAGTCAC TTTGATGGTCTATCATTTTTTCCTCATGATCCTGCAAAGAAAGAATTTGCAGAGGAGTTGTTTTCCTGCTCTGGTTCATTCAGCAAATCCATAAATTCCA CATTCAAAGGTGAAGCAGATGAAGCTGGTGGATACAGCTTATGCTCCATTTATTGA
AA sequence Show only first row Show all	>Potri.010G214800.2 pacid=42797877 polypeptide=Potri.010G214800.2.p locus=Potri.010G214800 ID=Potri.010G214800.2.v4.1 annot-version=v4.1 MGKFGGNKKIYLGAKEVLSPALTSNPDPPPVFYGITSCAYSTCVLVHRVLGLPGIARLFRQDRPAWCKEKEYPTIKVPSLEHNNEVKGVSLDLIKCIDSH FDGLSFFPHDPAKKEFAEELFSCSGSFSKSINSTFKGEADEAGGYSLCSIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02780		GSTL1	glutathione transferase lambda...		Potri.010G214800 [exp]	0	1
AT3G01850			Aldolase-type TIM barrel famil...		Potri.001G332700 [exp]	4.47	0.8464
AT4G37608			unknown protein		Potri.009G004400 [exp]	7.07	0.8362
AT5G47890			NADH-ubiquinone oxidoreductase...		Potri.001G071900 [exp]	7.61	0.8511
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.007G091300 [exp]	9.16	0.8150
AT2G40110			Yippee family putative zinc-bi...		Potri.008G067100 [exp]	9.48	0.8277
AT5G27200		ACP5	acyl carrier protein 5 (.1)		Potri.005G044800 [exp]	9.79	0.8231	Pt-ACP1.1
AT1G55340			Protein of unknown function (D...		Potri.001G004000 [exp]	9.89	0.7798
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	12.12	0.8470
AT2G28370			Uncharacterised protein family...		Potri.009G014600 [exp]	13.49	0.8236
AT3G07940			Calcium-dependent ARF-type GTP...		Potri.001G026400 [exp]	13.92	0.7425

Compare expression of checked genes

Potri.010G214800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.