Plant FIBer expression Database

Potri.010G214900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55030 312 / 1e-108 PGPS2 phosphatidylglycerolphosphate synthase 2 (.1)
AT2G39290 312 / 1e-107 PGP1, PGS1, PGPS1 phosphatidylglycerolphosphate synthase 1 (.1)
AT4G04870 59 / 3e-10 CLS cardiolipin synthase (.1)
AT4G38570 42 / 0.0002 PIS2 probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (.1.2)
AT1G68000 40 / 0.0004 ATPIS1 phosphatidylinositol synthase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G046700
[exp]
375 / 2e-131 AT3G55030 316 / 5e-108 phosphatidylglycerolphosphate synthase 2 (.1)
Potri.004G018300
[exp]
57 / 1e-09 AT4G04870 351 / 1e-120 cardiolipin synthase (.1)
Potri.004G175600
[exp]
45 / 1e-05 AT1G68000 358 / 7e-127 phosphatidylinositol synthase 1 (.1)
Potri.009G135500
[exp]
45 / 1e-05 AT1G68000 340 / 6e-120 phosphatidylinositol synthase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023471
[exp]
341 / 6e-118 AT2G39290 332 / 2e-113 phosphatidylglycerolphosphate synthase 1 (.1)
Lus10040348
[exp]
311 / 2e-105 AT2G39290 301 / 3e-100 phosphatidylglycerolphosphate synthase 1 (.1)
Lus10001977
[exp]
296 / 4e-102 AT2G39290 310 / 1e-106 phosphatidylglycerolphosphate synthase 1 (.1)
Lus10030301
[exp]
295 / 7e-102 AT2G39290 311 / 2e-107 phosphatidylglycerolphosphate synthase 1 (.1)
Lus10007662
[exp]
53 / 4e-08 AT4G04870 304 / 1e-103 cardiolipin synthase (.1)
Lus10018349
[exp]
54 / 5e-08 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01066 CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence
>Potri.010G214900.1 pacid=42798852 polypeptide=Potri.010G214900.1.p locus=Potri.010G214900 ID=Potri.010G214900.1.v4.1 annot-version=v4.1
ATGGGATCCGAGAATAAAATCGACGATGTAGGTTGGTATAACCATGACAGCCAAGATCAACCGCTGTCAACATCACCGTCTATGCAGATTCACAATCAAC
AACAGCAACATTCTAAATTTCTAACTTTGCCTACCGTTTTAACCCTCGGTCGCGTCGCTGCTGTGCCGCTACTTGTTGCTACATTTTATGCGGATAGTTG
GTGGGGAAGAACTGCTACAACAAGTATTTTTATTGTTGCAGCAATCACTGATTGGCTTGACGGGTACCTTGCACGAAAGATGAAGTTAGGCACAGCTTTT
GGTGCTTTTTTGGATCCGGTAGCTGATAAGCTTATGGTTGCTGCCGCCTTGATCTTATTATGTTCTAGACCTTTGGAAGTTGCATTGTCAGGAGAAGTAC
CTTGGCTGTTCACTGTACCCGCAACTTCAATTATTGGCCGGGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCACGGAATAGCAAACTTTTAGA
GGCTGTTGCTGTAAATAACTTAGGGAAGTGGAAAACTGCTACCCAGATGATTTCACTAACTATCCTTTTGGCTGCTCGAGACAGCAGTCTTGAAGGACCA
GGGATTTTAGTACCTTCTGGTGTCATTTTGCTTTATATCTCAGCAGGTCTTTCTATATGGTCTTTAGCTGTATATGTGAGTAAGATATGGAAAGTATTGC
TGAAGTAG
AA sequence
>Potri.010G214900.1 pacid=42798852 polypeptide=Potri.010G214900.1.p locus=Potri.010G214900 ID=Potri.010G214900.1.v4.1 annot-version=v4.1
MGSENKIDDVGWYNHDSQDQPLSTSPSMQIHNQQQQHSKFLTLPTVLTLGRVAAVPLLVATFYADSWWGRTATTSIFIVAAITDWLDGYLARKMKLGTAF
GAFLDPVADKLMVAAALILLCSRPLEVALSGEVPWLFTVPATSIIGREITMSAVREWAASRNSKLLEAVAVNNLGKWKTATQMISLTILLAARDSSLEGP
GILVPSGVILLYISAGLSIWSLAVYVSKIWKVLLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55030 PGPS2 phosphatidylglycerolphosphate ... Potri.010G214900
[exp]
0 1
AT3G25500 AHF1, AFH1, ATF... ARABIDOPSIS THALIANA FORMIN HO... Potri.014G174700
[exp]
6.00 0.6959
AT5G38380 unknown protein Potri.017G115200
[exp]
8.48 0.6529
AT1G35220 unknown protein Potri.002G100800
[exp]
11.22 0.6680
AT1G51630 O-fucosyltransferase family pr... Potri.008G008300
[exp]
11.40 0.6949
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Potri.010G182100
[exp]
11.66 0.6147
AT3G52990 Pyruvate kinase family protein... Potri.010G233200
[exp]
12.12 0.6751
AT2G43070 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PE... Potri.014G150000
[exp]
12.64 0.6464
AT5G49830 EXO84B exocyst complex component 84B ... Potri.010G249900
[exp]
16.97 0.7035
AT1G53730 SRF6 STRUBBELIG-receptor family 6 (... Potri.003G073700
[exp]
20.49 0.6399
AT5G62670 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPas... Potri.012G071600
[exp]
25.21 0.5593 HA2.1

Potri.010G214900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.