Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18610 595 / 0 Protein kinase superfamily protein (.1.2) AT5G02800 582 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 541 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G07870 526 / 0 Protein kinase superfamily protein (.1.2) AT2G28590 496 / 4e-176 Protein kinase superfamily protein (.1) AT3G20530 480 / 3e-170 Protein kinase superfamily protein (.1) AT3G24790 467 / 2e-165 Protein kinase superfamily protein (.1) AT3G07070 467 / 1e-164 Protein kinase superfamily protein (.1) AT4G13190 454 / 6e-160 Protein kinase superfamily protein (.1) AT1G20650 447 / 2e-157 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046500 [exp] 709 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 605 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 597 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 591 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 557 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 543 / 0 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 543 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G234100 [exp] 530 / 0 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 506 / 0 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040350 [exp] 623 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 618 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 616 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 613 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 600 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 596 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 547 / 0 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10019897 [exp] 538 / 0 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 537 / 0 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 480 / 1e-169 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G215100.1 pacid=42799573 polypeptide=Potri.010G215100.1.p locus=Potri.010G215100 ID=Potri.010G215100.1.v4.1 annot-version=v4.1 ATGGGTTGCTTTTCTTGTGCTGGAAAGTCCAGAAAAAATGGCAGTAACAAGAAGCCTGATGATCAGATCCCGTCATCTTCAGATAAAACAAAGTCAAATA TGGCACTGGATGTGAAGGAGGCTTCTAAGGATGGAAGCTCTGAATACATTGCAGCACATACATTCACATTTCGCGAACTGGCAAATGCAACAAAGAACTT CAGGGCAGATTGTCTTTTGGGTGAAGGAGGTTTTGGCAGAGTATATAAAGGGAGATTGGAGAGTACCAATCAGGTTGTAGCTATCAAGCAACTTGATCGT AATGGGCTGCAAGGGAATAGAGAGTTCCTTGTTGAAGTATTGATGTTGAGCCTACTCCACCATCCAAATCTCGTTAACTTGATTGGCTATTGTGCTGATG GAGATCAAAGACTTTTGGTTTATGAATACATGCCATTAGGATCCCTGGAAGACCATCTACATGACCTGCCACCTGATAAAAAACGACTTGACTGGAATAC AAGAATGAAAGTAGCTGCTGGTGCTGCGAAAGGCTTGGAGTATTTGCATGACAGTGCTAACCCCCCTGTTATATACCGTGATTTGAAATGCTCAAACATT TTACTTGGTGAAGGTTATCATCCCAAACTATCTGATTTTGGCTTGGCGAAATTGGGTCCTGTTGGTGACGAGACTCATGTATCCACCAGAGTGATGGGAA CCTATGGATATTGTGCACCTGAATATGCAATGACAGGTCAGCTTACTCTGAAATCAGATGTTTATAGCTTTGGTGTTGTTCTCCTTGAGATTATTACTGG GAGGAAAGCTATTGATAATTCAAGAGCCGCTGGGGAGCATAACTTGGTTGCATGGGCACGACCGTTATTTAAAGATCGGAGAAAATTTGCGCAGATGGCT GACCCATTACTCCAAGGCCACTATCCAATGAGGGGCTTGTATCAAGCTCTTGCTGTTGCTGCAATGTGTGTTCAAGAACAGCCTAATATGCGACCCCTTA TAGCTGATGTAGTCACAGCACTTTCTTATCTTGCTTCCCAGAATTATGATCCAGAGACCCAGCCAGTCCAGGGCTCTCGCACAGGCCCTTCTACTCCTGG AACTAGAAGGGAACAATGA
AA sequence Show only first row Show all	>Potri.010G215100.1 pacid=42799573 polypeptide=Potri.010G215100.1.p locus=Potri.010G215100 ID=Potri.010G215100.1.v4.1 annot-version=v4.1 MGCFSCAGKSRKNGSNKKPDDQIPSSSDKTKSNMALDVKEASKDGSSEYIAAHTFTFRELANATKNFRADCLLGEGGFGRVYKGRLESTNQVVAIKQLDR NGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNTRMKVAAGAAKGLEYLHDSANPPVIYRDLKCSNI LLGEGYHPKLSDFGLAKLGPVGDETHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWARPLFKDRRKFAQMA DPLLQGHYPMRGLYQALAVAAMCVQEQPNMRPLIADVVTALSYLASQNYDPETQPVQGSRTGPSTPGTRREQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18610			Protein kinase superfamily pro...		Potri.010G215100 [exp]	0	1
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	2.23	0.9482	Pt-RGP3.4
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.011G069500 [exp]	3.16	0.9396
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	5.91	0.9137
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.005G218400 [exp]	6.00	0.8952
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	8.48	0.9124	Pt-SAH7.2
AT3G62060			Pectinacetylesterase family pr...		Potri.014G110900 [exp]	8.94	0.9084
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.002G208251 [exp]	11.83	0.9065
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	12.00	0.9106
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	13.56	0.9161
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	14.28	0.9211

Compare expression of checked genes

Potri.010G215100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.