Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02810 441 / 2e-144 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G60100 290 / 2e-89 APRR3 pseudo-response regulator 3 (.1.2.3) AT2G46790 189 / 3e-52 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G24470 191 / 1e-51 APRR5 pseudo-response regulator 5 (.1) AT5G61380 116 / 9e-27 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT3G16857 97 / 1e-20 GARP ARR1 response regulator 1 (.1.2) AT1G67710 92 / 2e-19 GARP ARR11 response regulator 11 (.1) AT4G16110 93 / 3e-19 GARP ARR2 response regulator 2 (.1) AT2G25180 92 / 3e-19 GARP ARR12 response regulator 12 (.1) AT4G31920 88 / 7e-18 GARP ARR10 response regulator 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046200 [exp] 1132 / 0 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.002G179800 [exp] 201 / 4e-55 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.015G002300 [exp] 195 / 6e-53 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.012G005900 [exp] 191 / 1e-51 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 189 / 9e-51 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.015G061900 [exp] 121 / 2e-28 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.018G111300 [exp] 100 / 1e-21 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 99 / 4e-21 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G213500 [exp] 95 / 6e-20 AT4G16110 602 / 0.0 response regulator 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014018 [exp] 440 / 1e-142 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1) Lus10019899 [exp] 353 / 7e-111 AT5G02810 347 / 4e-109 pseudo-response regulator 7 (.1) Lus10032934 [exp] 191 / 6e-52 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10015571 [exp] 190 / 2e-51 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10008879 [exp] 182 / 2e-48 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10023230 [exp] 181 / 5e-48 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10008878 [exp] 181 / 6e-48 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10023229 [exp] 169 / 7e-45 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10015720 [exp] 124 / 2e-29 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 122 / 6e-29 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.010G215200.23 pacid=42797703 polypeptide=Potri.010G215200.23.p locus=Potri.010G215200 ID=Potri.010G215200.23.v4.1 annot-version=v4.1 ATGCTCTCAATGAACAACGGGTTTGCGGAGCAAAATCATATTGTAGAAGATGAGCAGAAGAAAATAAGGGACGGGATCATGGGTGAGGACCAGGAGCTCT CAGAGGAAGGTGAGTCCCAGATTAATGAGGATGAAAAAGATGTGAATGATAAGGGCATGGAATCGCTTCAGGTCCTGACCGATGCACAGGTTGTTATTCA GAGCCAACACCAACAGTCTCAAGGGCCTTTGGTTCACTGGGAGAGGTTCCTGCCTCGTCGGTCTCTAAAGGTTCTGCTTGTGGAAAATGATGATTCAACT CGCCATGTTGTCAGTGCGTTGCTTCGAAATTGCGGCTACGAAGCTACTGCTGTAGCAAATGGTCTACAAGCTTGGAAGCTGTTACAAGATCTGACAAATC ACATTGATCTTGTTTTAACTGAGGTGGCTATGCCTTGTTTATCAGGCATTGGCCTTTTAAGCAACATTATGAGCCACAAAACTTGCAGGAATATTCCTGT AATTATGATGTCATCTCATGATTCCATGAATGTAGTCTTTAGGTGTTTGTCAAAGGGTGCAGTTGACTTTTTAGTGAAGCCTATTCGAAAAAATGAGCTT AAAATCCTTTGGCAACATGTTTGGAGGAGGTGCCACAGCGCTAGTGGTAGCGGGAGTGAGAGTGCTGTACGGATTCAAAAATCCTTGAAGTCAAAAGGTG CTGATGAGTCCGATAATGATACTGACAGCAATGATGACGATGACATTGGAAGCATTGGTTTGAATGCAAGGGATGGAAGTGACAACGGAAGTGGTACCCA GAGTTCCTGGACAAAGAGGGCCGTTGAAGTTGACAGTCCCAAACCAATGTTACCGTGGGACCAATTAGCTGATCCTCCTGATAGCACATTCGCCCAGGTT ATTCACTCAAGGTCTGAGGCATGTGACAACTGGGTGCCCCTGGCTACAACGAAGAAGTTTGGAAAGCAGGATGATGAACTTGATAACTTTGTTATGGGCA AGGACTTGGAGATAGGAGTACCTAGAATTCCAAATTTGCAGCATAAAGATCTAAGCAAAGAGGTACTGACCAACATAGCAGGGAATAATGGAGAGAAATT TCGTGAAATAAAATCAGAACAGGACAGTGGGCATTTAGAGAAAGGACAACTGGAGCTCAACAGTGAAAAACACAATACAGAATTGAGAAACCAAGGCAAT GATCTCAAGGGTGTCAGCACAAACATTACTAATCCTCAGATTGAAAGTGAAGTCGTAGACATCTCAAACAGTCTCTCTTCTAACAAAAAGAATGAGGTCA TCTATGAGACCAAGGAGATGCCTTCTCTTGAACTGGTTTTGAAAAGGCTGAGAGATACTGGAGATGCTTGGGCCAGTGCCAATGACCGAAATGTGTTGAG ACATTCAGACCTTTCAGCATTCTCAAGGTATAATTCTGCTTCAACCGCTTATCAGGCTCCAACAGGGAATGTAGGTAGCTGTTCTCTGCTTGATAAATGT TCAGAAGCAGCAAAAACAGAATCAATGCAAAATCTTCAATCCAACTCAAATAGCACACCTCGCAATCTATGTTCCAATGGAAGTAGTAATAACAATGATG TGGGCACTACAACTAATAATGCTTTCGCCAAACCTTTGGTAATCAGAGACAAGCCAACACCAAAATCTACAGTTAAATGCCTCCATCCTTCTTCTGCCTT CCAGCCAGTGCAGAATGACCAGACACTTCATGCTCAGCCTGTAATACAGGGTAAGGGTGATGCTCCAATCGCTAACACAATTCTGGCTCAATCAAGAGGC ATGAACCAGCAAGGCCAAGTGCAACACCATCGTCACTGTGTTCATAACATGCCCCTCACCATCCGCAATGATTTGTCTTTGAAAAATATGGCAGCTGCAG GTCCCCGATGTGGGTCATCTAACATGTTGAGCACACCCATGGAAGGAAATGCTGGTAATTACAGTATGAATGGGAGCAATGGCCAAAATGAGAGCTGCAT TGCTTTGAATCCCAGAGGAATAAACTTGGAGAGCAATAGTGGGGCAGCTGGAAAAGACGAAAATCCTGGTACAGGTGATGAAAGTGGGAGCAGGAGCGGA GGCGGTCAAAATTGCTTTGCACTGAGAGAGGCTGCATTGAACAAATTCCGCCAGAAGAGGAAGGAGAGATGCTTTGAGAAGAAGGTTCGATACCAGAGTA GGAAGAAGCTGGCAGAACACAGACCCCGTGTCCGAGGACAATTTGTGCGACAAGTACCATTTGAACATAAAGATGAGGATGCACAGAGCTAA
AA sequence Show only first row Show all	>Potri.010G215200.23 pacid=42797703 polypeptide=Potri.010G215200.23.p locus=Potri.010G215200 ID=Potri.010G215200.23.v4.1 annot-version=v4.1 MLSMNNGFAEQNHIVEDEQKKIRDGIMGEDQELSEEGESQINEDEKDVNDKGMESLQVLTDAQVVIQSQHQQSQGPLVHWERFLPRRSLKVLLVENDDST RHVVSALLRNCGYEATAVANGLQAWKLLQDLTNHIDLVLTEVAMPCLSGIGLLSNIMSHKTCRNIPVIMMSSHDSMNVVFRCLSKGAVDFLVKPIRKNEL KILWQHVWRRCHSASGSGSESAVRIQKSLKSKGADESDNDTDSNDDDDIGSIGLNARDGSDNGSGTQSSWTKRAVEVDSPKPMLPWDQLADPPDSTFAQV IHSRSEACDNWVPLATTKKFGKQDDELDNFVMGKDLEIGVPRIPNLQHKDLSKEVLTNIAGNNGEKFREIKSEQDSGHLEKGQLELNSEKHNTELRNQGN DLKGVSTNITNPQIESEVVDISNSLSSNKKNEVIYETKEMPSLELVLKRLRDTGDAWASANDRNVLRHSDLSAFSRYNSASTAYQAPTGNVGSCSLLDKC SEAAKTESMQNLQSNSNSTPRNLCSNGSSNNNDVGTTTNNAFAKPLVIRDKPTPKSTVKCLHPSSAFQPVQNDQTLHAQPVIQGKGDAPIANTILAQSRG MNQQGQVQHHRHCVHNMPLTIRNDLSLKNMAAAGPRCGSSNMLSTPMEGNAGNYSMNGSNGQNESCIALNPRGINLESNSGAAGKDENPGTGDESGSRSG GGQNCFALREAALNKFRQKRKERCFEKKVRYQSRKKLAEHRPRVRGQFVRQVPFEHKDEDAQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Potri.010G215200 [exp]	0	1
AT4G09680		ATCTC1	conserved telomere maintenance...		Potri.002G129000 [exp]	3.00	0.8236
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.003G194000 [exp]	8.66	0.7638
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.014G029000 [exp]	16.97	0.7508
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.008G205900 [exp]	18.43	0.7610
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.005G113400 [exp]	18.97	0.7382
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	20.54	0.7654
					Potri.008G195300 [exp]	22.95	0.7017
					Potri.005G201350 [exp]	24.10	0.7507
AT5G24060			Pentatricopeptide repeat (PPR)...		Potri.004G072400 [exp]	24.89	0.7563
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Potri.011G091200 [exp]	26.94	0.7176	MRP1.1

Compare expression of checked genes

Potri.010G215200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.