Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55005 357 / 2e-125 TON1B tonneau 1b (TON1b) (.1) AT3G55000 357 / 3e-125 TON1A TONNEAU 1A, TONNEAU 1, tonneau family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046000 [exp] 485 / 3e-176 AT3G55005 370 / 1e-130 tonneau 1b (TON1b) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030297 [exp] 458 / 3e-165 AT3G55005 359 / 2e-126 tonneau 1b (TON1b) (.1) Lus10001983 [exp] 444 / 8e-160 AT3G55000 359 / 3e-126 TONNEAU 1A, TONNEAU 1, tonneau family protein (.1) Lus10023478 [exp] 388 / 4e-138 AT3G55005 340 / 4e-119 tonneau 1b (TON1b) (.1) Lus10040360 [exp] 367 / 3e-129 AT3G55005 327 / 1e-113 tonneau 1b (TON1b) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0561 [poplar] [flax] LisH PF16045 [poplar] [flax] LisH_2 LisH
Representative CDS sequence Show only first row Show all	>Potri.010G215500.1 pacid=42798836 polypeptide=Potri.010G215500.1.p locus=Potri.010G215500 ID=Potri.010G215500.1.v4.1 annot-version=v4.1 ATGGACGATTACACGAGAGAAATGATGGACCTGAAAACACTCGTCACTCGAACCCTAGAGAAGAAAGGCGTCCTTGCTAAGATCCGGGCTGAACTCAGGG CAAGTGTTTTTGAGGCAATTGAAGAGGAGGATAGGGTGATTGAAAAAGATGAAGGCTTACCTCCTGCATTATTGGGTAGCTGCAATGATCGTGCTAAACA ACTTCATGCTTCTCCATCAGGGAGGCTGCTAACTGCACTGATATGTGAATACTTAGACTGGGCGCAGCTAAACCATACACTAAAAGTCTATCTACCAGAA TGCAATTTGCAAAAAGATTCTTGGAAAGCTGAGTTGAATGAATTTAGTAGCAAGAATGGATATGATCTGAACAGGAATGGCGATAGCGGCCCTTTGCTTT TGGATGTTCTTGAAGGATTCTTGAAATTTGAGAATTTATCACAAGGAAGGGGTGCTGGAAGGAGAGTACCAGAGGCCGAGTCCTTATCCAATGTAGAGTC TAGGAATATACGAATGCGAAGACCCTCTTCATCATCTGTTGCTGGTGGCTTACCTCCACTAGGAAGACCAGCTTCTTCCCTGGCATCTGATAGGAGAGCA GGGTCTTCCATGTCTGGTTACAGGAAAGATGATTACAGTAGGAGATATGACAGTGAAGAACTTCCTGAGGATGTGATTCAAGCTTCTGCTGCCCTGGAAA ACCTTCAGTTGGACAGAAAAGCTCGGAATCTTACTTCATCTTGGAGGCATGCGGGGGATGTCATCAGTGATGATGATGGGAGGGTTGACCATATTTAG
AA sequence Show only first row Show all	>Potri.010G215500.1 pacid=42798836 polypeptide=Potri.010G215500.1.p locus=Potri.010G215500 ID=Potri.010G215500.1.v4.1 annot-version=v4.1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPE CNLQKDSWKAELNEFSSKNGYDLNRNGDSGPLLLDVLEGFLKFENLSQGRGAGRRVPEAESLSNVESRNIRMRRPSSSSVAGGLPPLGRPASSLASDRRA GSSMSGYRKDDYSRRYDSEELPEDVIQASAALENLQLDRKARNLTSSWRHAGDVISDDDGRVDHI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Potri.010G215500 [exp]	0	1
AT3G05000			Transport protein particle (TR...		Potri.013G031000 [exp]	2.23	0.8855
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Potri.012G138500 [exp]	16.06	0.8681
AT4G28088			Low temperature and salt respo...		Potri.006G182500 [exp]	17.37	0.8706
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Potri.001G398600 [exp]	18.97	0.8051
AT4G25680			PPPDE putative thiol peptidase...		Potri.004G079800 [exp]	19.74	0.8436
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.008G040300 [exp]	19.74	0.8588	Pt-VMA10.1
AT4G02620			vacuolar ATPase subunit F fami...		Potri.005G217600 [exp]	21.49	0.8568	VATF.1
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.013G051500 [exp]	25.53	0.8608
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Potri.010G069600 [exp]	29.47	0.8474
AT1G15120			Ubiquinol-cytochrome C reducta...		Potri.002G069200 [exp]	29.93	0.8238

Compare expression of checked genes

Potri.010G215500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.