Plant FIBer expression Database

Potri.010G216000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G45740 464 / 7e-164 hydrolase family protein / HAD-superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G045700
[exp]
650 / 0 AT3G45740 488 / 3e-172 hydrolase family protein / HAD-superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023480
[exp]
523 / 0 AT3G45740 448 / 2e-157 hydrolase family protein / HAD-superfamily protein (.1)
Lus10008416
[exp]
435 / 4e-151 AT3G45740 481 / 2e-169 hydrolase family protein / HAD-superfamily protein (.1)
Lus10001969
[exp]
246 / 8e-79 AT3G45740 298 / 9e-100 hydrolase family protein / HAD-superfamily protein (.1)
Lus10040363
[exp]
133 / 1e-37 AT3G45740 129 / 6e-37 hydrolase family protein / HAD-superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF13242 Hydrolase_like HAD-hyrolase-like
CL0137 HAD PF13344 Hydrolase_6 Haloacid dehalogenase-like hydrolase
Representative CDS sequence
>Potri.010G216000.3 pacid=42797942 polypeptide=Potri.010G216000.3.p locus=Potri.010G216000 ID=Potri.010G216000.3.v4.1 annot-version=v4.1
ATGAGATTCCAAAAAACGGTAGCGTCTGGGTTTCCCCAGATAAAAAACAAAGCAGCGCCATTTCTGTTTCAATATCAGGCCTCGCGTTCCTTCTCCTCAC
AGCTCCAGTCAGGGCAGAAACGACGGTCCTCTTTTGGAATCGCCTTTGATATCGATGGCGTTATTCTTCGAGGTAAAGATCCCACCGGCGGCTCTCCTCA
AGCTCTGCGTAGATTATACGGAGATTCTGGAAACTTGAACGTTCCCTTTTTGTTCCTGACAAATGGAGGTGGCATTCCGGAATCGAGGAGAGCTAGTGAG
TTAAGCGAACTGCTTGGAGTAAAGATTTTACCTTCTCAGGTTTTACAGGGCCACTCACCTTTTAAAAGTTTCATGGAAAGATACGAGAATCAACTCATTG
TTGCCACTGGAAAAGGAGAACCTGCTGTAGTAATGTCTGAGTATGGTTTCAAAAAAGTTGTATCCTTAGACGAGTATGCATCCTGTTTTGAAAACATTGA
TCCTCTGGCTCAATACAAAAAGTGGACAACTAAGCAGGGGTTGGATAGGAGCAGTCTCACCCTGAATACAGTGCCGAGATATGACGTTTCTTCTGAAACA
GTTAAGGCGGTATTTGTTGTTAGTGATCCTGTAGATTGGGGCAGGGACATTCAGGTTCTCTGTGATGTTTTAAGATGTGGAGGTCTTCCTGGACAGGAGA
ATGGGCATCAGCCCCAGCCTCCTCTATATTTTGCCGCTGATGATCTCGAATACCAGGCTGCGTTTCCTTCTAATCGACTTGGAATGGGTGCTTTCAGAAT
TGCTCTGGAGAGTGTCTTCAACAGAATTCATTATAATCCACTGGAGTATGTTTGTTTTGGGAAGCCTGATCCATTTGTATTTAAGAATGCCGAAGCTATG
TTGAAGCAACTTCAGCCATCTTATCATAGTGATAATTTTAAGGAACCTGGAGATTCTGGGTTACGGTCATTCAAAACTCTCTATATGATTGGTGACAATC
CTTCAGTTGACGTTAAAGGTGCACAACAGGCAGGACATCCTTGGTTTTCTATCCTAACAAGGACAGGTGTTTTCCGCGGGAAACATAACCATGCAGAGTT
TCCTGCAGATCTGGCAAGTCAAACGATGAAACTTTCTGCATGCTGTAAATTAATATTCATAAACATGATGGGATCACACGTTTCCCCACTGACAAATTAC
CCAGGTTATTGA
AA sequence
>Potri.010G216000.3 pacid=42797942 polypeptide=Potri.010G216000.3.p locus=Potri.010G216000 ID=Potri.010G216000.3.v4.1 annot-version=v4.1
MRFQKTVASGFPQIKNKAAPFLFQYQASRSFSSQLQSGQKRRSSFGIAFDIDGVILRGKDPTGGSPQALRRLYGDSGNLNVPFLFLTNGGGIPESRRASE
LSELLGVKILPSQVLQGHSPFKSFMERYENQLIVATGKGEPAVVMSEYGFKKVVSLDEYASCFENIDPLAQYKKWTTKQGLDRSSLTLNTVPRYDVSSET
VKAVFVVSDPVDWGRDIQVLCDVLRCGGLPGQENGHQPQPPLYFAADDLEYQAAFPSNRLGMGAFRIALESVFNRIHYNPLEYVCFGKPDPFVFKNAEAM
LKQLQPSYHSDNFKEPGDSGLRSFKTLYMIGDNPSVDVKGAQQAGHPWFSILTRTGVFRGKHNHAEFPADLASQTMKLSACCKLIFINMMGSHVSPLTNY
PGY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G45740 hydrolase family protein / HAD... Potri.010G216000
[exp]
0 1
AT5G49760 Leucine-rich repeat protein ki... Potri.003G046450
[exp]
1.41 0.9017
AT5G54680 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic ... Potri.004G031800
[exp]
10.09 0.8291
AT5G65730 XTH6, XTR10 xyloglucan endotransglucosylas... Potri.007G008500
[exp]
13.41 0.8514 XTH2.2
AT4G03400 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-respon... Potri.013G144300
[exp]
18.22 0.8480 10,Pt-DFL2.2
AT3G59780 Rhodanese/Cell cycle control p... Potri.019G097901
[exp]
20.00 0.7477
AT3G59780 Rhodanese/Cell cycle control p... Potri.013G128300
[exp]
20.04 0.8551
AT3G59780 Rhodanese/Cell cycle control p... Potri.019G098001
[exp]
23.66 0.7680
Potri.017G095500
[exp]
25.13 0.8277
AT4G34090 unknown protein Potri.009G099600
[exp]
25.49 0.8369
AT1G11720 ATSS3 starch synthase 3 (.1.2) Potri.004G014100
[exp]
26.70 0.7873

Potri.010G216000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.