Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39260 1534 / 0 binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045400 [exp] 1699 / 0 AT2G39260 1375 / 0.0 binding;RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040364 [exp] 994 / 0 AT2G39260 1620 / 0.0 binding;RNA binding (.1) Lus10023481 [exp] 986 / 0 AT2G39260 1537 / 0.0 binding;RNA binding (.1) Lus10030801 [exp] 95 / 6e-23 AT2G39260 142 / 1e-40 binding;RNA binding (.1) Lus10030802 [exp] 45 / 0.0003 AT1G27070 204 / 2e-58 5'-AMP-activated protein kinase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02854 [poplar] [flax] MIF4G MIF4G domain CL0020 [poplar] [flax] TPR PF04050 [poplar] [flax] Upf2 Up-frameshift suppressor 2
Representative CDS sequence Show only first row Show all	>Potri.010G216100.3 pacid=42798611 polypeptide=Potri.010G216100.3.p locus=Potri.010G216100 ID=Potri.010G216100.3.v4.1 annot-version=v4.1 ATGGATCACCATGAAGATGAGAGTCGTGGTGGAAGTGAAACTCCTAGAAAGGAAGACGATGAGGAAGCTGTTGCTCGACTTGAGGAAATGAAGAAATCTA TCGAGGCAAAAGTTGCTCTTCGTCAAAGCAATTTGAACCCTGAAAGGCCTGACTCAGGATTTCTCAGGACATTGGATTCCAGCATTAAGCGCAATACAGC AGTTATTAAAAAATTAAAGCAGATAAATGAGGAACAGAAGGAAGGACTGATGGAAGAGTTGCGAAATGTGAACCTTAGTAAATTTGTCAGTGAAGCTGTA ACATCCATTTGTGATGCGAAACTTAGAACTTCTGACATACAAGCAGCTGTTCAGATCTGTTCACTGCTTCATCAACGATACAAAGACTTCTCGCCGAGCC TAGTACAAGGGCTCTTGAAAGTCTTTTTTCCTGTAAAATCTGGAGAAGACTTAGATGTGGACAAGAACTCAAAGGCTATGAAGAAGCGAAGCACCTTAAA GCTGCTTTTGGAACTTTTCTTTGTTGGAGTTACAGAAGACAGCAGTGTTTTCATCAATATTATTAAGGATCTTACCAGTGCAGAGCACTTAAAGGACAGA GATACTACCCAGACAAATCTGACTCTCCTTGCTAGTTTTGCTCGACAAGGAAGAGTTTTTCTGGGACTTCCACTATCTGGACAAGAAATTCATGAAGAGT TTTTTAAGGGCCTTAACATCACGACAGATCAAAAGAAAATCTTCAGGAAGGCCTTCCACGCATACTATGATGCTGTCGCTGAACTACTTCAGTCAGATCA TGCATCACTTCGTCAAATGGAGCATGAAAATGCAAAGATTTTGAATGCTAAAGGAGAGCTGAGTGATGAAAATGTTTCATCATATGAAAAGCTGCGAAAA TCTTATGACCATTTGTACCGTAATGTGTCATCTTTAGCAGAAGCACTTCATATGCAACCTCCAGTGATGCCAGAAGATGGTCATACAACTAGGCTTACTA GCGGAGAGGACATTTCATCGCCTGCTGCAGGGAAAGATTCTTCTGTCCTCGAAGCTTTGTGGGATGATGAAGATACTAGAGCCTTCTATGAATGCTTACC GGATCTCAGAGCATTTGTTCCAGCAGTGTTATTGGGAGAGGTAGAACCCAAAGCGAATGATCATTCTGTGAAGACTCAAGATCAACAAAGTGAGCTGGCA CCTGAATCGGACCAAGGCCAATCCACCCAAGACATGGCAGAGGTTACTGCAGAGTCTGGCACTTTGCAGGAGGGAAAAAGTACGGAGAAAGGAAAGGATA AGGAAGAGAAAGATAAAGAGAAAGTAAAAGATCCTGAAAAAGAGAAAGGCAAGGAAAAAGATGCGGAGAGAAAAGGAGAAAATGAGAAGGAGAAACTCAA AAGTCTTGAAGGGACTAATCTGGATGCTCTGTTACAGAGGCTCCCTGGTTGCGTCAGCCGTGACCTAATTGATCAATTGACTGTAGAGTTTTGTTATTTT AATTCAAAGTCAAATCGGAAAAAGCTTGTGAGGGCATTATTTAATGTACCCAGGACATCTCTGGAACTGCTACCATACTACTCACGCATGGTTGCCACTC TCTCAACTTGCATGAAGGATGTATCTTTCATGCTCTTACAGTTGTTAGAGGAGGAGTTCAATTTCTTAATCAATAAAAAGGACCAAATGAACATTGAAAC GAAGATCAGAAATATTAGATTTATTGGAGAGCTATGCAAGTTCAGAATTGCACCAGCAAGCACTGTTTTTAGTTGCTTGAAGGCTTGTTTGGATGATTTC ACTCACCATAACATTGATGTTGCTTGCAATCTTCTTGAGACATGTGGCCGTTTTCTGTATCGTTCTCCTGAAACTACTGTGCGCATGGCTAATATGTTGG AGATACTTATGCGCTTGAAAAATGTCAAAAATTTGGATCCTCGGCATAGCACCCTTGTAGAAAATGCTTACTATCTGTGCAAACCACCTGAAAGGTCTGC ACGAGTGTCTAAAGTCCGTCCTCCCTTGTATCAGTATATCAGAAAATTACTATTCTCCGATCTAGACAAGTCTTCTATTGAGCATGTGCTCAGGCAACTT CGTAAATTACCATGGAGTGAATGTGAGGCATACCTTTTAAAGTGCTTTATGAAGGTTCATAAAGGGAAGTATGGTCAAATTCACTTGATTGCTTCTCTCA CTGCTGGCTTGAGCCGTTATCATGATGAATTTGCAGTGTCGGTTGTTGACGAGGTTTTGGAGGAGATTAGGCTTGGGCTTGAATTAAATGACTATGGGAT GCAGCAAAGGCGCATAGCCCACATGCGATTCTTGGGGGAACTATACAATTATGAACATGTGGATTCTTCTGTGATTTTTGAGACTCTCAACTTGATCCTT GTCTTTGGTCATGACACTCCGGAGCAAGACGTGCTAGATCCACCAGAGGACTGTTTCCGCATCAGGATGGTTATCATTCTTCTGGAGACTTGCGGACACT ACTTTGACCGAGGCTCTTCTAAGAGGAAACTTGATCGATTTTTAATACACTTTCAGAGGTATATTCTCAGCAAAGGTGCACTACCTCTTGATGTTGAATT TGACTTACAGGACTTATTTGTGGAATTACGTCCAAATATGATACGATATACATCCATTGAAGAAGTTAATGCTGCTCTTATAGAACATGAGGAGAATGAA CGTATTGTCTCCACCGACAAGGCCAATAGTGAAAAGCACTCTGACATTGATAAACGATTGAGTAGGACTACTTCCAGTATCATATCTACCAATGGACAAA GAACCACGAATGGGAATGAGGAAAATGGATTGCATGACATTGGTGGCAGTGACACTGATTCAGGCAGTGGCACCATTGACCAGGATGGACATGATGAAGA AGAGTTAGATGAAGAGAATCATGATGATAGGTGTGACACGGAAGATGAGGATGATGGTGGGGGTGGACCTGCTTCTGATGAGGATGATGAAGTCCACGTC AGACAAAAGTTTGCAGAGGCGGACCCTCATGAAGTAGCTAGTTTTGAGCAGGAGCTGAGGGCTGTAATGCAGGAGAGCATGGAGCAACGCAGGCAGGAAC TCCGTGGTCGGCCAGCATTAAATATGGTGATACCCATGAACTTGTTTGAGGGGCCCCCTAGGGATCATCATGGAAGGGGGGTTGGAGGGGAAAGTGGTGA CGAGGATGAGGGGGCTGGAGGAAACAAGGATGTTCAGGTGAAAGTTCTTGTGAAGCGTGGGAATAAGCAACAAACAAAGCAGATGTACATTCCTAGGGAT TGCTCTCTTGTGCAGAGCACGAAACAGAAAGAAGCAGCTGAGTTTGAAGAGAAACGAGACATCAAGAGACTGGTGTTGGAGTATAATGATAGAGAAGAGG AGGAGAATAACGGGTTGGGGAATCAGACATTGAATTGGATGCCAGGTGGTACCAGCAGAGTTACCAGCCGCAGCAGCACATGGGAAGGAAGTAGAGGAAG AGGTGCTGGGTCACGTTATGGGTATTATCATCATTCAGGCAGTGGACTCTATCATGGCAGAAGAAGGTGA
AA sequence Show only first row Show all	>Potri.010G216100.3 pacid=42798611 polypeptide=Potri.010G216100.3.p locus=Potri.010G216100 ID=Potri.010G216100.3.v4.1 annot-version=v4.1 MDHHEDESRGGSETPRKEDDEEAVARLEEMKKSIEAKVALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQKEGLMEELRNVNLSKFVSEAV TSICDAKLRTSDIQAAVQICSLLHQRYKDFSPSLVQGLLKVFFPVKSGEDLDVDKNSKAMKKRSTLKLLLELFFVGVTEDSSVFINIIKDLTSAEHLKDR DTTQTNLTLLASFARQGRVFLGLPLSGQEIHEEFFKGLNITTDQKKIFRKAFHAYYDAVAELLQSDHASLRQMEHENAKILNAKGELSDENVSSYEKLRK SYDHLYRNVSSLAEALHMQPPVMPEDGHTTRLTSGEDISSPAAGKDSSVLEALWDDEDTRAFYECLPDLRAFVPAVLLGEVEPKANDHSVKTQDQQSELA PESDQGQSTQDMAEVTAESGTLQEGKSTEKGKDKEEKDKEKVKDPEKEKGKEKDAERKGENEKEKLKSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYF NSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSFMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPASTVFSCLKACLDDF THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLYQYIRKLLFSDLDKSSIEHVLRQL RKLPWSECEAYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVSVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGELYNYEHVDSSVIFETLNLIL VFGHDTPEQDVLDPPEDCFRIRMVIILLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFVELRPNMIRYTSIEEVNAALIEHEENE RIVSTDKANSEKHSDIDKRLSRTTSSIISTNGQRTTNGNEENGLHDIGGSDTDSGSGTIDQDGHDEEELDEENHDDRCDTEDEDDGGGGPASDEDDEVHV RQKFAEADPHEVASFEQELRAVMQESMEQRRQELRGRPALNMVIPMNLFEGPPRDHHGRGVGGESGDEDEGAGGNKDVQVKVLVKRGNKQQTKQMYIPRD CSLVQSTKQKEAAEFEEKRDIKRLVLEYNDREEEENNGLGNQTLNWMPGGTSRVTSRSSTWEGSRGRGAGSRYGYYHHSGSGLYHGRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	0	1
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Potri.011G003500 [exp]	2.00	0.8759
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.006G047700 [exp]	2.00	0.8738
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	3.00	0.8729	PAFC901
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	3.74	0.8359
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.008G111100 [exp]	4.89	0.8388
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	5.00	0.8552
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	5.74	0.7831
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	7.74	0.8588
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	9.00	0.8292
AT5G11700			unknown protein		Potri.018G058300 [exp]	10.24	0.8039

Compare expression of checked genes

Potri.010G216100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.