Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13610 422 / 1e-146 Protein of unknown function (DUF155) (.1) AT1G69380 338 / 5e-114 RRG RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045200 [exp] 562 / 0 AT5G13610 436 / 5e-152 Protein of unknown function (DUF155) (.1) Potri.008G092400 [exp] 363 / 8e-124 AT1G69380 505 / 2e-180 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) Potri.010G162500 [exp] 355 / 7e-121 AT1G69380 511 / 0.0 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001978 [exp] 474 / 8e-167 AT5G13610 457 / 4e-160 Protein of unknown function (DUF155) (.1) Lus10030300 [exp] 470 / 6e-165 AT5G13610 454 / 4e-159 Protein of unknown function (DUF155) (.1) Lus10036803 [exp] 357 / 3e-121 AT1G69380 479 / 4e-170 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) Lus10037127 [exp] 326 / 2e-109 AT1G69380 415 / 2e-145 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02582 [poplar] [flax] DUF155 Uncharacterised ACR, YagE family COG1723
Representative CDS sequence Show only first row Show all	>Potri.010G216300.2 pacid=42799379 polypeptide=Potri.010G216300.2.p locus=Potri.010G216300 ID=Potri.010G216300.2.v4.1 annot-version=v4.1 ATGTGGCGAGCCATCGACGCTCACTCGAAAACAATCCGCTTCTCTCTCCGTACAGCCCTCTTCTCTTACCACCAAAACCCTCTCCCCATCTCTTCTCTTA AACCACCGAAAGCCGGTCATTTTTTCTCTCTCTTCAAAACCCTAAGTGTCTCTTCATCAACCCCTAATACCTCCTTTTCCGTTATCGCTTTCACCACACG CCACTGTAATAATGTTGCTTGGGGCGGCGGAGTTCGCGGTGGTAATTTGGTGGTTGTGAGGTGCATTTCTTCGATCTCGGCCTCTGCGGCGCCGAATCAG CAGCACACGGCGGTGGACTGGAATGAGCCGGTATCCTCTTCGGACGTAGGCGTTGGTGGTAAAGGCACGGGTGTCGAGGTGGACACCCGGCCGTCCATTC CTGTTCGCGCCTTTTTCTTCTCTACTAGTGTGGATTTGAAGAGCGTAGTGGAACAGAACAAGCAAAATTTTATACCACCAACGTCGCGAATGACTAATTA TGTTGTTCTTAGGTTTGGGAATCTCTCTCAACCCTCTGGTTTGGGCTCTTGCATAAGTGGAAGTAGTTGCTCTTACATGGTAGTATTCCAATATGGATCC ATTGTTTTGTTTAATGTCCGTGAACATGAGGTTGATGAATATCTGAACATTGTAAGGAGACATGCCTCAGGATTGCTCCCTGAAATGAGAAAGGATGAGT ATGAGGTGAGAGAGAAGCCAACTCTAAACACATGGATGCAAGGTGGATTGGATTACATTATGTTGCAGTTCTTGAACACTGATGGAATACGGACAATTGG TAGTGTTCTTGGTCAAAGTATAGCTCTTGACTACTATGGACGCCAGGTTGATGATATGGTTGCTGAATTTACTGACATAAATCGCGGGATGGAAAAAACT GGAACGTTTTCTATGGACAGTAAAAAGCTTTTTCAAATAGTGGGGAAGGCCAATTCTAATCTTGCTGATGTGATTCTAAAGCTTGGGCTTTTTGAAAGAT CAGACATAGCTTGGAAAGATGCCAAATATGCTCAGATATGGGAATATCTCAGAGATGAATTTGAATTAACTCAGAGATTTGCGAGTCTTGATTTTAAGCT GAAGTTTGTTGAGCATAATATTCGCTTTCTTCAGGAAATTTTGCAAAACAGGAAATCAGACTTTTTGGAGTGGCTCATCATTGTGTTGATTGGTGTCGAA ATCATTATATCCGTTTTTGATATTGTCCACAGATCAGGATTTAAATTCTTCTAA
AA sequence Show only first row Show all	>Potri.010G216300.2 pacid=42799379 polypeptide=Potri.010G216300.2.p locus=Potri.010G216300 ID=Potri.010G216300.2.v4.1 annot-version=v4.1 MWRAIDAHSKTIRFSLRTALFSYHQNPLPISSLKPPKAGHFFSLFKTLSVSSSTPNTSFSVIAFTTRHCNNVAWGGGVRGGNLVVVRCISSISASAAPNQ QHTAVDWNEPVSSSDVGVGGKGTGVEVDTRPSIPVRAFFFSTSVDLKSVVEQNKQNFIPPTSRMTNYVVLRFGNLSQPSGLGSCISGSSCSYMVVFQYGS IVLFNVREHEVDEYLNIVRRHASGLLPEMRKDEYEVREKPTLNTWMQGGLDYIMLQFLNTDGIRTIGSVLGQSIALDYYGRQVDDMVAEFTDINRGMEKT GTFSMDSKKLFQIVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIVLIGVE IIISVFDIVHRSGFKFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13610			Protein of unknown function (D...		Potri.010G216300 [exp]	0	1
AT5G42470			unknown protein		Potri.002G021700 [exp]	1.41	0.7052
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.013G077500 [exp]	4.24	0.6597
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	5.29	0.7300
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Potri.014G071800 [exp]	8.66	0.6687
AT5G11630			unknown protein		Potri.002G045600 [exp]	13.78	0.6661
AT1G17160			pfkB-like carbohydrate kinase ...		Potri.011G114100 [exp]	22.97	0.6228
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.007G007100 [exp]	28.14	0.6424
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.014G194300 [exp]	30.03	0.5849
					Potri.013G062200 [exp]	31.81	0.6427
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	32.83	0.6382

Compare expression of checked genes

Potri.010G216300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.