Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64870 167 / 3e-49 unknown protein AT5G13620 158 / 1e-45 unknown protein AT5G11220 134 / 7e-37 unknown protein AT1G49290 122 / 1e-31 unknown protein AT3G45200 95 / 7e-22 unknown protein AT5G24355 76 / 7e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045000 [exp] 533 / 0 AT5G13620 172 / 9e-51 unknown protein Potri.006G252800 [exp] 170 / 2e-50 AT1G64870 261 / 6e-87 unknown protein Potri.001G155600 [exp] 127 / 7e-34 AT5G13620 92 / 3e-21 unknown protein Potri.014G054900 [exp] 84 / 4e-18 AT1G64870 91 / 4e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002022 [exp] 164 / 1e-47 AT1G64870 241 / 3e-78 unknown protein Lus10009296 [exp] 154 / 5e-44 AT1G64870 235 / 3e-76 unknown protein Lus10041678 [exp] 142 / 2e-39 AT1G64870 237 / 6e-77 unknown protein Lus10036502 [exp] 109 / 1e-28 AT1G49290 84 / 1e-19 unknown protein Lus10041424 [exp] 109 / 1e-27 AT1G49290 90 / 7e-21 unknown protein Lus10021560 [exp] 94 / 1e-21 AT1G49290 125 / 4e-33 unknown protein Lus10017168 [exp] 92 / 2e-20 AT5G13620 125 / 6e-33 unknown protein Lus10002905 [exp] 55 / 6e-08 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G216400.1 pacid=42800202 polypeptide=Potri.010G216400.1.p locus=Potri.010G216400 ID=Potri.010G216400.1.v4.1 annot-version=v4.1 ATGGAATCATCTTCTTCTTCTTCTTCTGTTTTGAATCCTATGGTGAGTCCAGAAGAGTTCAAGATTTTTCACACCATAGACCGAACTCTTTATACTAGAC TAGTTGTCAAGCTTGACCGCGACCCCGCAGACTCAATGCAAGTCATGGCCTTGTGGATTTGGCTTGAAAGGGAGGCACGTGGTAATTTAGTGAAAAGAAT GCTGTCATTGCCTGATACCCTTATCTATTCACTAGCAGATGAGGCTGTTCTTTGCTTGAATTGCATAGAGACGGACCGGTTTGATTTTTCTCTAGAAACT ATGAACGATGAAATTCCTTTGACTCAACAGTTGACAAAAACTGGTTTCTCTCTTCGGTTTTTCCATGACAATCGACTTGGCATTCTTCGTGCGATTGCAA AGATCACCAATGAAGTTTGTGCAAGAGCTTTCGAAGATATCTCGCGACAAGTTATGGAGAGAAAGGCTGTTGCAGGAGGAAGTAATGTTGCTGAAAATGT TGTTGGTCAAAACACTAACCCTTTGAATTATTATGGTCCAGTGATTAATCCTGTACTGTACTGTAATTCGAATGCTGCTGGTGTTTATGGTCAAACGGGT ATCAGTCGACGATTCATGTGGCCTAATGTAGGGCACCCTGGATTTTTGCCTGGTTATGATCCTTATGATCTTGCATTTCAGAGGCAGATTCTGAACACCG AGAACATTGCTGGGGTATTGAATCGTCTAAAGATTAGTGCTGGCGACCAGAAGGAAGTGCAAGCTGATAGTAGGACTGTTTTCTTGACGTTCTCCAAAGG GTACCCTATTTCAGAAGATGAAATCAGAGACTATTTCACCAAAAAGCATGGAGAGTGTATTGAAGCAATATATATGCAAGAAGTTTCGGCAGAGGAGCAG CCACTGTATGCACGCCTTGTTGTACCCTCTGCTGCCATCCTTCATAACGTTCTCCTGGGACAGGGCAAGGCAAAGTTCACCATTAATGGAAAACATGTTT GGGCCAGGAAATATGTCCGGAAGAATCTTAAGTCGTCGTCTCCATCAAAGTCACCAACATCACCACAGCCAACCTCACCCGACACAGGATCATCAAGCCT GAACTAA
AA sequence Show only first row Show all	>Potri.010G216400.1 pacid=42800202 polypeptide=Potri.010G216400.1.p locus=Potri.010G216400 ID=Potri.010G216400.1.v4.1 annot-version=v4.1 MESSSSSSSVLNPMVSPEEFKIFHTIDRTLYTRLVVKLDRDPADSMQVMALWIWLEREARGNLVKRMLSLPDTLIYSLADEAVLCLNCIETDRFDFSLET MNDEIPLTQQLTKTGFSLRFFHDNRLGILRAIAKITNEVCARAFEDISRQVMERKAVAGGSNVAENVVGQNTNPLNYYGPVINPVLYCNSNAAGVYGQTG ISRRFMWPNVGHPGFLPGYDPYDLAFQRQILNTENIAGVLNRLKISAGDQKEVQADSRTVFLTFSKGYPISEDEIRDYFTKKHGECIEAIYMQEVSAEEQ PLYARLVVPSAAILHNVLLGQGKAKFTINGKHVWARKYVRKNLKSSSPSKSPTSPQPTSPDTGSSSLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64870			unknown protein		Potri.010G216400 [exp]	0	1
AT1G28710			Nucleotide-diphospho-sugar tra...		Potri.015G110600 [exp]	2.82	0.8106
AT5G39010			unknown protein		Potri.018G102900 [exp]	11.74	0.7566
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G004500 [exp]	32.74	0.7733
AT3G03720		CAT4	cationic amino acid transporte...		Potri.019G039600 [exp]	78.37	0.6735
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.003G151100 [exp]	88.94	0.6564

Compare expression of checked genes

Potri.010G216400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.