Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54970 338 / 5e-115 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081501 [exp] 131 / 3e-37 AT3G54970 52 / 3e-08 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040366 [exp] 382 / 2e-129 AT3G54970 347 / 1e-115 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10023483 [exp] 246 / 7e-81 AT3G54970 230 / 7e-75 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [poplar] [flax] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Potri.010G216500.1 pacid=42800084 polypeptide=Potri.010G216500.1.p locus=Potri.010G216500 ID=Potri.010G216500.1.v4.1 annot-version=v4.1 ATGACAAGCACCGGATTCCTCTACAGCAACGGCATGATTTTCTACCCGCCAGACACACCTCCCATCTCCACCTTCCTCGAATCCAATCCAGGAGCTTACA CCACCACACGGACACACAACAATACAGCATCTCTCTTATTCTGGGACCGACACTTACAACGACTTTCAAACTCTGTCAAAATCCTATTAACCTCAAACCC ACAATTTCTCTTCAAATCCTTAAACTCCACAATAAACCCACTATTGACCCCTCCTCCACCGCCAAACCCCATGTGGGAATCGACAATTAAGTCTCTCGTC AACGAGACGGTAAATAAAGTGTTGCCAGTTGCGTTGAGGGAGACGAGAAATGAAGGAGAGGAACTGGCAGTTACTGCTCTTGTTACTGGAAATACAGAGA ATCTGAGTGAAGTTAAGGGAAATGTTTATGAGGCACTTGATGTTCATGTTCATGTTGGAAGCCATGTGCCTCACGTGTTTGGTGTTAAAGGAAATGGAGC AAGAGTAGCTGTGGTCGGTCCTGGGAGGGATATTGCAGAAGCTAAGTATTCTGATTGGGTTAGGTTAAGGAAGTCTTTGGAAAAGTTGAGGCCTCCTTCT GTAACTGAGCTGTTGTTGTCTAAAGATGGTGATCGAATACTTGAAGGTTGTGTCACTAATTTTTTTGTTGTTTGTCGCAAGGATGACCGAAACGAGAAAT ACTTAGGTGTTAATGAAAACACATTTCCTTATGAAGTACAGACAGCTCCTATTGGTGACGGGGTCCTTCCAGGAGTCATACGCCAATTAGTAATTGAAGT GTGCTTGAGCAAGGGAATTCCATTTCGAGAAGTTGCTCCATCATGGTCGGAGCATGAATTTTGGCAAGAAGCATTCATTACAAGTAGCCTAAGAATAATA CAGCGAGTGGAGAAAATTCAAGCTCCAAGTTCGTGGCAGTCATTGGAACTAAAAGCCCTTAAGGAGATCTCATGGGAGGAAAAGCAGTTCGAGGAGGATC CTGGGATGATCACAGCATTGATCCAGAAAGAGATCATGGAGAAGGCAGGCCTCTAA
AA sequence Show only first row Show all	>Potri.010G216500.1 pacid=42800084 polypeptide=Potri.010G216500.1.p locus=Potri.010G216500 ID=Potri.010G216500.1.v4.1 annot-version=v4.1 MTSTGFLYSNGMIFYPPDTPPISTFLESNPGAYTTTRTHNNTASLLFWDRHLQRLSNSVKILLTSNPQFLFKSLNSTINPLLTPPPPPNPMWESTIKSLV NETVNKVLPVALRETRNEGEELAVTALVTGNTENLSEVKGNVYEALDVHVHVGSHVPHVFGVKGNGARVAVVGPGRDIAEAKYSDWVRLRKSLEKLRPPS VTELLLSKDGDRILEGCVTNFFVVCRKDDRNEKYLGVNENTFPYEVQTAPIGDGVLPGVIRQLVIEVCLSKGIPFREVAPSWSEHEFWQEAFITSSLRII QRVEKIQAPSSWQSLELKALKEISWEEKQFEEDPGMITALIQKEIMEKAGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54970			D-aminoacid aminotransferase-l...		Potri.010G216500 [exp]	0	1
AT3G12170			Chaperone DnaJ-domain superfam...		Potri.016G051800 [exp]	11.83	0.6153
					Potri.019G062666 [exp]	19.64	0.6695
AT1G28280			VQ motif-containing protein (....		Potri.011G118200 [exp]	20.97	0.6585
					Potri.009G086850 [exp]	28.61	0.6673
					Potri.005G193800 [exp]	40.62	0.6435
AT4G26288			unknown protein		Potri.009G120300 [exp]	44.82	0.6484
AT5G58900	MYB		Homeodomain-like transcription...		Potri.009G042600 [exp]	48.66	0.5675
AT3G11690			unknown protein		Potri.006G200100 [exp]	51.52	0.6400
AT1G27752			Ubiquitin system component Cue...		Potri.014G016900 [exp]	55.39	0.6105
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.001G307800 [exp]	61.48	0.6137	N21L9

Compare expression of checked genes

Potri.010G216500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.