Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37060 236 / 2e-80 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT2G38880 225 / 2e-76 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT3G53340 220 / 3e-74 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT4G14540 188 / 8e-62 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 186 / 2e-60 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT2G13570 174 / 2e-55 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT1G21970 160 / 1e-49 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT2G47810 157 / 2e-49 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT5G47670 155 / 3e-48 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G09030 134 / 2e-40 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G044800 [exp] 346 / 4e-124 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.016G085000 [exp] 250 / 5e-86 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.016G006100 [exp] 183 / 3e-59 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 181 / 1e-58 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 179 / 3e-58 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 179 / 5e-58 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G083400 [exp] 174 / 2e-55 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.007G082200 [exp] 173 / 4e-55 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G065300 [exp] 167 / 6e-53 AT2G13570 201 / 2e-65 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023484 [exp] 251 / 2e-86 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10040366 [exp] 257 / 1e-83 AT3G54970 347 / 1e-115 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10015058 [exp] 206 / 2e-68 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10022514 [exp] 186 / 2e-60 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 185 / 6e-60 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001751 [exp] 182 / 8e-59 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001177 [exp] 179 / 3e-57 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10023167 [exp] 173 / 9e-56 AT2G37060 172 / 2e-55 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10020899 [exp] 170 / 2e-53 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10033477 [exp] 168 / 1e-52 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00808 [poplar] [flax] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Potri.010G216600.3 pacid=42798643 polypeptide=Potri.010G216600.3.p locus=Potri.010G216600 ID=Potri.010G216600.3.v4.1 annot-version=v4.1 ATGGCGGATAATCCGACGAGTCCGGCGGCGGGGAGCCACGAGAGTGGTGGTGAACAGAGCCCGCGGTCAGGGGTGAGAGAGCAGGATAGATACCTGCCAA TTGCTAATATAAGTAGGATCATGAAGAAGGCGTTGCCAGCTAATGGAAAAATTGCCAAGGATGCTAAGGATACTGTTCAGGAATGTGTTTCTGAGTTTAT TAGCTTCGTTACCAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGAAAGACAATCAACGGGGATGATTTGTTGTGGGCAATGGCAACATTAGGATTC GAGGACTATATTGATCCACTTAAGGTGTACCTGGCTAGGTACCGGGAGCTGGAGGGTGATGCAAAGGGATCTGCTAGAGGTGGAGATGGATCTTCTAAAA GGGAAGCAGTTGGAGGTCTGCCTGCTCAAAATGCACAGTTTGCTCTTCAAGGATCCATGAATTATATAAGCCCACAAGGACAGGGACAGCATATGATCCT TCCTTCCATGCAAGGCAATGAGTAG
AA sequence Show only first row Show all	>Potri.010G216600.3 pacid=42798643 polypeptide=Potri.010G216600.3.p locus=Potri.010G216600 ID=Potri.010G216600.3.v4.1 annot-version=v4.1 MADNPTSPAAGSHESGGEQSPRSGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGF EDYIDPLKVYLARYRELEGDAKGSARGGDGSSKREAVGGLPAQNAQFALQGSMNYISPQGQGQHMILPSMQGNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Potri.010G216600 [exp]	0	1
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	3.87	0.9007
AT1G30890			Integral membrane HRF1 family ...		Potri.017G028425 [exp]	10.48	0.8759
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	11.74	0.8841
AT1G43890		ATRAB-C1, RAB18...	RAB GTPASE HOMOLOG 18-1, ARABI...		Potri.005G063500 [exp]	14.49	0.8769	RAB1.8
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.019G057300 [exp]	15.49	0.8596	Pt-MSD1.1
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	19.89	0.8843	RPT4.1
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Potri.008G044800 [exp]	19.89	0.8689
AT5G36290			Uncharacterized protein family...		Potri.013G086700 [exp]	22.53	0.8927
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	23.49	0.8891
AT1G65270			unknown protein		Potri.019G055100 [exp]	24.49	0.8843

Compare expression of checked genes

Potri.010G216600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.