Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09670 237 / 1e-65 Tudor/PWWP/MBT superfamily protein (.1.2) AT3G54760 231 / 3e-63 dentin sialophosphoprotein-related (.1.2) AT5G02950 219 / 3e-60 Tudor/PWWP/MBT superfamily protein (.1) AT5G40340 143 / 3e-34 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 112 / 7e-25 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 111 / 1e-24 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 100 / 4e-21 Tudor/PWWP/MBT superfamily protein (.1) AT3G48190 90 / 1e-17 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT5G53430 52 / 2e-06 SET29, ATX5, SDG29 SET domain group 29 (.1) AT3G61740 47 / 8e-05 SDG14, ATX3 SET domain protein 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G044600 [exp] 1885 / 0 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.006G131800 [exp] 435 / 3e-134 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.016G085500 [exp] 293 / 2e-85 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.004G130600 [exp] 170 / 1e-42 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.005G026800 [exp] 122 / 1e-27 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 117 / 3e-26 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.013G018700 [exp] 110 / 6e-24 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.008G209900 [exp] 50 / 1e-06 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040367 [exp] 696 / 0 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 671 / 0 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10016267 [exp] 243 / 4e-67 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10012010 [exp] 239 / 1e-66 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10014546 [exp] 170 / 2e-42 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 167 / 9e-42 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 118 / 2e-26 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 116 / 6e-26 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10002382 [exp] 90 / 1e-17 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10042113 [exp] 84 / 9e-16 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Potri.010G216900.2 pacid=42800219 polypeptide=Potri.010G216900.2.p locus=Potri.010G216900 ID=Potri.010G216900.2.v4.1 annot-version=v4.1 ATGGTTAGGGGGTCTTCAAGCGAGGATGTTGATGGTGGGTGCACAGGCAATTTGGGTGATGGAGGTGGAGGGGGAGGGAGAAAGGAAACTGCTGCTTGTG GTCATGCCGACGGAGATGCGCAACATTCAGATTTTAGTGGTGTAGTTGGTGATTCAGGGACACATGAGAATAGGGGTTCTGGTGTTGAGGCATCAAACTC AGAAGTTGAGTCTTCTAAGGTTGCAGAATCTGAAGAAGGGAAACCAGCTGAGGGCGGGGAGAAGGAGAGGCAGGTGAGTGGCCATGGTGATGAGACTTCA CAGGAAGTTCAGGAGTTTGCAGAATCTAAAGGAAAAGGTAAACCGGTAGAGGGTGGAGAGGAAGAGATGGAGGTTGGCGGAGATGGTGGTAAGACTTCAT CTAAAGTCGAGGATGCAGATACTGATGCTGATGCTGATGCTCAGTGTGTGAGAATTGTAAGTGGGATTGGTGGGGAAGCCCAAGCTATAGTAGAAGAAGC GACTATTGTTACGGATGAGGAGAGTTTGAAAAGGGAATTGGTAGAGGAGGGTGTTGAGGGAGTTGGGATTGATGTTAGTCAGAAAGTGAGTTCTCGACTA GTTGGGCTGTCAGAGAATGAATCTCAGGATCAAAGAGCTGAAAGTGGAGCAGGAGGTCCTTCCATGGCAGTAGGTTCTTCAGTAGGTGAAACCCAAGTTA TAGAGAAATGTGAATTGGTTGAGGAAGCTGCGGGTAGGGCCGAGGAAAAAGATGGCAATGTGAACGATGCACTTCAGGATTCAGAGACGCAAGAGGTGCT TGTTTTGCATAACGAAGTGTGGAATTCTGTTACTGAAACTGCAGTTGTAACTTCTCCAGCTGTGGAAGATATGAATGTAGAGACCAAAGTTGTTGAGGAA GTTGTGGTGATGGCCAATAATGAAGGTTTAGATCCCAAGGTTGAAGCAACTAGGAGTGATGCTTTGAAGGGAGAACTTGCTGGTGATTTAGAGGGGATTA TCTCAACTTCTGAAAGTTCACCAGTTTTAACAGAAAAAGACAGCATTGCCAACCCAGACTCGGAATTGTTGGATGAACAAACACAAGTTGCCATTGAAGG GAGGGTTTCATCAACTGACGACAAAAATATAACATGTCCTAACAATGAAGGTATGGACACTGATGCTTTTAGTGAAAGTTTTTGTTTTTCAGTGGAAGAA CTGCAGGGAACATCTGAGACAGCCAATGGGAGCACTGAAAATGGCTATAATGCATGTGCAGATTCACAATCTTCGTATCAACCAGCTCAAGTAGTTGTTG GAGCTGTAGTTGTAGCAAAGGAAAACAATGTGCTTCTGAATCCTGAAAAGAATAAAAAAGCAATAACTGCGTGCATAGTTAATAACGCTGAAGAAGCTGA TCTACAGAAAGAGCAAGTAATAACAGTTTGCCAACAGCAGAAAGTTGAGACCATTAATGGAAGCACTGAAATAAGGACTAAGACAACATGTGGAGGGATG GAAATGGATGTTGAAACGGCTTTGACACACAACGATGAGGTTTTGACCTCACGTACTGAAGTTCCAGATCCTTCTGTAAAAGATCAACAGTTGAAGCCTG AAGAAGGTTTAGACAAAAGTGCACCCAGTGATCCTGCTCATGTTGATTCAATCAAAGAACAACTGATGGAAGTTCAAGAACAGGCTACTCGTGCTAAAGA ATTTGGAGGGGAGAAGAAAAACCTAGAAGAACAGAACTCACATGCCGAAACAGCATCCGTGTGCACAGAAACAGATAGCCAGCTCATGGATGTGGGGGAA AATGTTATCGCAAGCAATGAGGAAGCTTTGATTTCCAAAACTGAACTCAAGGAGCTTGCTGAAAGCGATCAGCAATTAAAGGTCGAGGAAGGTTTGGATG AGGGTGCATCTCATGGTCCTTTTGAGATTGTTTCAAATGCAGGGCAAGAAATGACAAATGAAGAACATGTTCTTGATGCTGAACAGGTTGATTTACAAGG GCAAGAAATGGAAGTTGAAGAACAGGATACTGACACTGAACAGCTGAACACCATGGAGGAGAAATCTTCTAAATTGTCAGTGTTAAAGCCTGGAAGCTCA GAGAAAGAAGATCAAGCTTGTTATCTGCTGCCGCCAGATAATGAAGGTGAGTTTTCTGTATCAGATTTGGTCTGGGGTAAAGTAAGGAGTCATCCTTGGT GGCCTGGACAGATATTTGATCCATCAGATGCCTCCGAGAAAGCAATGAGGTATCATAAGAAGGACTGCTATTTAGTAGCATATTTTGGGGACCGCACATT TGCATGGAATGAAGCATCTTTGCTAAAGCCTTTCAGGTCACACTTCTCTCAGGTTGAGAAGCAGAGCAATTCGGAAGTATTTCAGAATGCTGTTGATTGT TCTCTGGAAGAAGTTTCCAGACGAGTTGAGCTGGGTCTGGCTTGCTCATGTCTGCCAAAGGATGCCTACGATGAAATCAAATGTCAGGTAGTTGAAAATA CTGGAATCCGGCCAGAGGCAAGTACAAGAGATGGTGTTGACAAAGATATGAGTGCTGATTTGTTTCAACCAGATAAATTAGTGGATTATATGAAAGCATT AGCGCAATCTCCATCTGGTGGGGCTAATAGATTGGAGTTTGTGATTGCAAAGTCTCAGTTGCTGGCCTTCTATCGATTAAAAGGTTACTCTGAACTGCCT GAATATCAGTTTTGTGGAGGGTTGTTGGAGAAGTCAGATGCTTTACAATTTGAGGATGGATCGATTGATCACACATCTGCTGTTTATGAGGACCATGGGC AAATTTCATCGGGTGAGGAGATTTTGCAAACTCAAAGAGGCTCTTCTCACAAACGCAAACATAATCTGAAGGATAGCATCTATCCCAGGAAAAAAGAGAG AAACTTGTCTGATTTGATCAGTGACTCGTGGGATTCTGTGGGTGATGAAATTGGGTCTGATGGGAAAGCAAACAGTATGCTAGTTTCCCCTTCTGGCAAG AAAAGAAAAGGCTCCGATACCTTTGCTGATGATGCATACATGACAGGACGGAGGAAGACTATATCTTTTGCAAAAGTGTCTTCAACCGCATTGAAGCCCT CCTTCAAGATTGGCGAATGCATCCAAAGAGTTGCTAGCCAAATGACTGGGTCTCCTTCTATCCTGAAGTGTAATAGCCCTAAGGTAGATGGAAGCAGCGA TGGGCTTGTTGGAGATGGATCTGATGCTTCGTTTTTGCATTCTGAGGATGCTGAGATAAAGAGAATAATAGTTCCAACAGAATACTCATCACTTGATGAT CTGCTATCACAACTTCACTTGACAGCACAAGATCCCTTGAAAGGATATGGTTTCTTGAACATCATCATTAGCTTCTTCTCTGATTTCAGGAACTCAGTGG TCATGGACCAGCATGATAAAGTATCTGGTAAGAGAAAAACATCCCATTCTTCTGGTGGTTTTCCTGAAACATTTGAATTCGAGGATATGAATGACACTTA TTGGACAGACCGGGTTATTCAAAATGGTTCTGAAGAGCAACCACCACGTAAAAGTAGGAAAAGGGATAATCTTTTTGTGCCTGTTGTTCTGGATAAACCC AGTGGTAGGTCAAACTCTAGGAAACAATATTCTGATAGCAATTATGATGTATCAGCTCAGAAACCAGCTGGTTATGTGGATGAGAAGGCTCCGGCAGAGC TTGTAATGCATTTCCCTGTGGTGGATTCTGTTCCTTCAGAAATAAGCCTAAATAAGATGTTCAGACGCTTTGGACCTCTAAAAGAATCCGAGACAGAAGT TGATAGGGATACCAATCGTGCCAGAGTAATTTTCAAGAGGTGTTCAGATGCAGAAGCTGCTTATGGCAGTGCTCCCAAGTTCAACATTTTTGGTCCGATT CTTGTGAATTACCAGCTCAACTACTCTATATCTGTTCCTTTTAAAACTCCACCTCTATTCCAAGATGAGGAAGATGCCACTCTTTTTCTTCAATATTGA
AA sequence Show only first row Show all	>Potri.010G216900.2 pacid=42800219 polypeptide=Potri.010G216900.2.p locus=Potri.010G216900 ID=Potri.010G216900.2.v4.1 annot-version=v4.1 MVRGSSSEDVDGGCTGNLGDGGGGGGRKETAACGHADGDAQHSDFSGVVGDSGTHENRGSGVEASNSEVESSKVAESEEGKPAEGGEKERQVSGHGDETS QEVQEFAESKGKGKPVEGGEEEMEVGGDGGKTSSKVEDADTDADADAQCVRIVSGIGGEAQAIVEEATIVTDEESLKRELVEEGVEGVGIDVSQKVSSRL VGLSENESQDQRAESGAGGPSMAVGSSVGETQVIEKCELVEEAAGRAEEKDGNVNDALQDSETQEVLVLHNEVWNSVTETAVVTSPAVEDMNVETKVVEE VVVMANNEGLDPKVEATRSDALKGELAGDLEGIISTSESSPVLTEKDSIANPDSELLDEQTQVAIEGRVSSTDDKNITCPNNEGMDTDAFSESFCFSVEE LQGTSETANGSTENGYNACADSQSSYQPAQVVVGAVVVAKENNVLLNPEKNKKAITACIVNNAEEADLQKEQVITVCQQQKVETINGSTEIRTKTTCGGM EMDVETALTHNDEVLTSRTEVPDPSVKDQQLKPEEGLDKSAPSDPAHVDSIKEQLMEVQEQATRAKEFGGEKKNLEEQNSHAETASVCTETDSQLMDVGE NVIASNEEALISKTELKELAESDQQLKVEEGLDEGASHGPFEIVSNAGQEMTNEEHVLDAEQVDLQGQEMEVEEQDTDTEQLNTMEEKSSKLSVLKPGSS EKEDQACYLLPPDNEGEFSVSDLVWGKVRSHPWWPGQIFDPSDASEKAMRYHKKDCYLVAYFGDRTFAWNEASLLKPFRSHFSQVEKQSNSEVFQNAVDC SLEEVSRRVELGLACSCLPKDAYDEIKCQVVENTGIRPEASTRDGVDKDMSADLFQPDKLVDYMKALAQSPSGGANRLEFVIAKSQLLAFYRLKGYSELP EYQFCGGLLEKSDALQFEDGSIDHTSAVYEDHGQISSGEEILQTQRGSSHKRKHNLKDSIYPRKKERNLSDLISDSWDSVGDEIGSDGKANSMLVSPSGK KRKGSDTFADDAYMTGRRKTISFAKVSSTALKPSFKIGECIQRVASQMTGSPSILKCNSPKVDGSSDGLVGDGSDASFLHSEDAEIKRIIVPTEYSSLDD LLSQLHLTAQDPLKGYGFLNIIISFFSDFRNSVVMDQHDKVSGKRKTSHSSGGFPETFEFEDMNDTYWTDRVIQNGSEEQPPRKSRKRDNLFVPVVLDKP SGRSNSRKQYSDSNYDVSAQKPAGYVDEKAPAELVMHFPVVDSVPSEISLNKMFRRFGPLKESETEVDRDTNRARVIFKRCSDAEAAYGSAPKFNIFGPI LVNYQLNYSISVPFKTPPLFQDEEDATLFLQY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.010G216900 [exp]	0	1
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	3.87	0.8520
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.001G179800 [exp]	4.00	0.8315
AT1G21651			zinc ion binding (.1)		Potri.019G066500 [exp]	4.69	0.8493
AT1G03080			kinase interacting (KIP1-like)...		Potri.002G049600 [exp]	6.16	0.7928
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Potri.008G044600 [exp]	7.74	0.8241
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.001G082100 [exp]	11.48	0.8417
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	13.22	0.8237
					Potri.005G043750 [exp]	13.60	0.8243
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	15.29	0.8212
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	17.66	0.8217	CHR928,PIE1.4

Compare expression of checked genes

Potri.010G216900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.