Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38890 92 / 2e-20 unknown protein AT3G53320 66 / 6e-11 unknown protein AT2G37070 47 / 3e-05 unknown protein AT5G60150 43 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G044500 [exp] 700 / 0 AT2G38890 107 / 1e-25 unknown protein Potri.016G085600 [exp] 103 / 1e-22 AT3G53320 174 / 4e-46 unknown protein Potri.006G131650 [exp] 92 / 3e-19 AT3G53320 146 / 1e-36 unknown protein Potri.005G131500 [exp] 59 / 1e-08 AT5G60150 106 / 9e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023488 [exp] 108 / 6e-25 AT2G38890 100 / 3e-23 unknown protein Lus10023170 [exp] 74 / 3e-13 AT3G53320 133 / 1e-32 unknown protein Lus10026478 [exp] 68 / 2e-11 AT3G53320 56 / 8e-08 unknown protein Lus10019909 [exp] 55 / 2e-07 AT3G53320 93 / 1e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G217000.6 pacid=42798614 polypeptide=Potri.010G217000.6.p locus=Potri.010G217000 ID=Potri.010G217000.6.v4.1 annot-version=v4.1 ATGATAAAAAAAAATACCACTTCATCAAAAATGTCCTCTAAAGGAAGTTTTCAACAGTTTCAATTCTCAGAAGTTTCAGAGAGTAGAAAGAAGGCTGATG TTCAGATGATTCAGAGCCTGAATCCTCAGCATATGCAGAATCATGGAGAAAGAGCTGGACATAGAGAGACGGATGCTTCACAATCTGAATCCGAGTTTAA CTTGCGCAAGAGTTTGGCATGGGATAGTGCCTTCTTCACTAGTCCAGGAGTTCTGGACCCTGAAGAGCTGGAGACGCTTAGTATTCGGATTGTAGATAAT GGAGGATACACAACCGGGGGCGGGGAACTGAGGTCTGTACGCTCTCAGCCTGCAGGACCAGAAAGAAACAATGGAATTGATGAGTGCGCTGTGCGCAAAA GTTTAGCTTGGGATGGTGCCTTTTTTACAAGTTCAGGAGTTTTGAATGCCGAGGAGTTGTCTCTTTTAAATGGAGGATTTAGACCATCTGAAGCACATTT ACTTCCTGGGATTGAAGAAGTTTGGAGTTCTATTCAATCGAACTCAACAAGAAATACCGATTCTTACTCCCTTGCAAGCCTTGAGATTGATCTTTTAGAC AATATGAGAGCATTCATGCAAAAATCACCTAAGGCATCATCCAATAGGCCAACATCAACCGGAAAAGTTAGTAGAGAAAATGAAATGCGAAGGGGCAATA CTTCAAAAATATTGGATGCTTCCTCTCGATTAAGACAGGTTGCACCTAACAAAGAATCCAAATCTTTTCTCAAGCCACCAAAGATATCATGCCGTGCTCG CACTCTATCCACAGCTCCCAACAAAAGGGCTTCTTTGGGTGTAAACCATGTTAAATTGGAAAACAAAGGTGCACAAGTTGCTTCTGGGAGAACCAAGATT GTGTCAAAGAAAACTTGTATCCGGGGTTCATGCAGTATTGTCCCAAGTTCAACACCACCAGTGAAATCACCTTCTTCAGTTTTGCACACTGCTGGGAAAG AGTTTGGAGGATTTTGCTGTGCTCCTAATTTCACTGGTAAATCTCCTCCAGATTCCCTGAGGAGAATTAATTCCCAAGTGTCTAGTTCTGTTTCAACCTC TAGAACTCCTTCAAAGCATTCATTTGGAAACAAAAATGACTTGATGAAATCCAGAGACTCTGTCTGTTTATTATCCACGCCCAAGTCATCATCTTGTACA TCACCTGCTAGTTCCATGGATGGATGGTCCTCAGAATCATCTTCCATCGTTCTTAACCCAAGATCAAATGGTTTTGCTGCCATTCTTGCAACCACAGCAT GCACAGGGATTTCTTTTGGCAAGGATGCCTCTCAGGTAACAGATTCTCAGAGACGTCGTTATGAAGAACCTTCTTTGGTACATGAAAGTCAGGAAACAAG CTTCATGACTGCGCAACCAAACAAAAACTCAGAGCGAACCAGTCTTGTTCGGTCCAATGTTTCAAAAAGCTTAACATCTTCAAGTCTTCGAATGCCATTG CCGAAGATTGGATATTTTGATGCGGAAAATTTCGTGGATATAGCACCAAATGGAGGCCTGAAGTTTTCCTCTGGTGTACAATGCACTTCTTCCAAAAACA GAAGTGGTACTAGTGATGCCAATGGAGCTACAGATAGAACAAGATATGGCATGCATCGGTTGGCAGGAGCCACATCGATGTCTGTGAGTAAAACAGGCAC AAAGGAGCTGGTGCTGGTCTGCTTACAGGAGAAGAAGCAACCTGTGAAAGAGCATGAAGTTATCAAAGGGCATGATCGTGGAAATAAAGTGCGTAGAATT GATGAAGATAAAGAAAACATTGGTGGTTTTGAAAATCAAGTTGATGACCTGAGCAGACGTGTGCAAGGCATTGCTTTTAGGAGGGAATTGATCACGTAG
AA sequence Show only first row Show all	>Potri.010G217000.6 pacid=42798614 polypeptide=Potri.010G217000.6.p locus=Potri.010G217000 ID=Potri.010G217000.6.v4.1 annot-version=v4.1 MIKKNTTSSKMSSKGSFQQFQFSEVSESRKKADVQMIQSLNPQHMQNHGERAGHRETDASQSESEFNLRKSLAWDSAFFTSPGVLDPEELETLSIRIVDN GGYTTGGGELRSVRSQPAGPERNNGIDECAVRKSLAWDGAFFTSSGVLNAEELSLLNGGFRPSEAHLLPGIEEVWSSIQSNSTRNTDSYSLASLEIDLLD NMRAFMQKSPKASSNRPTSTGKVSRENEMRRGNTSKILDASSRLRQVAPNKESKSFLKPPKISCRARTLSTAPNKRASLGVNHVKLENKGAQVASGRTKI VSKKTCIRGSCSIVPSSTPPVKSPSSVLHTAGKEFGGFCCAPNFTGKSPPDSLRRINSQVSSSVSTSRTPSKHSFGNKNDLMKSRDSVCLLSTPKSSSCT SPASSMDGWSSESSSIVLNPRSNGFAAILATTACTGISFGKDASQVTDSQRRRYEEPSLVHESQETSFMTAQPNKNSERTSLVRSNVSKSLTSSSLRMPL PKIGYFDAENFVDIAPNGGLKFSSGVQCTSSKNRSGTSDANGATDRTRYGMHRLAGATSMSVSKTGTKELVLVCLQEKKQPVKEHEVIKGHDRGNKVRRI DEDKENIGGFENQVDDLSRRVQGIAFRRELIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38890			unknown protein		Potri.010G217000 [exp]	0	1
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G027700 [exp]	10.48	0.7017
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.016G129700 [exp]	14.38	0.6841
AT4G28230			unknown protein		Potri.019G116200 [exp]	16.18	0.7381
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.010G217700 [exp]	22.18	0.6345	LBD11.1
AT4G31980			unknown protein		Potri.003G208001 [exp]	24.67	0.6472
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	26.72	0.6656
AT2G33845			Nucleic acid-binding, OB-fold-...		Potri.011G114800 [exp]	30.33	0.6784
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.013G054100 [exp]	36.46	0.6376
AT1G23220			Dynein light chain type 1 fami...		Potri.008G133000 [exp]	39.24	0.6913
AT1G10380			Putative membrane lipoprotein ...		Potri.008G095900 [exp]	71.66	0.6521

Compare expression of checked genes

Potri.010G217000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.