Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63220 464 / 7e-166 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G044100 [exp] 627 / 0 AT5G63220 462 / 6e-165 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036505 [exp] 487 / 2e-174 AT5G63220 442 / 1e-156 unknown protein Lus10040371 [exp] 483 / 1e-172 AT5G63220 432 / 9e-153 unknown protein Lus10023490 [exp] 479 / 1e-171 AT5G63220 429 / 8e-152 unknown protein Lus10041421 [exp] 501 / 4e-169 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04190 [poplar] [flax] DUF410 Protein of unknown function (DUF410)
Representative CDS sequence Show only first row Show all	>Potri.010G217400.2 pacid=42799928 polypeptide=Potri.010G217400.2.p locus=Potri.010G217400 ID=Potri.010G217400.2.v4.1 annot-version=v4.1 ATGTCGCGAGAAAGACCAAGGAGGGCTACACTCCCTCCTGCTGAAGAGAATATTAAGAAATTGGAGAATGTGATAAATGAGGGTAATTACTATGGAGCTC AGCAGATGTACAAGTCTATCAGTGCAAGATACGTATCAGCTCAAAGACATTCTGAAGCTCTGGACATTCTTCACTCGGGAGCATGCCTCCAACTGAAAAA TGGCCAGGTTACTTGTGGGTCGGAGCTTGCTGTGATCTATGTGGAGACGCTTGTTAAAGCAAAAGTTCCTTATGATGATGATGTACTTGATTGCATTAGA AAAATCTACAAGACATTTCCTCAGATACCTTTGCCACAAGACTTGGGAGAGGACGAAGATATGCAACAACTCAATGAAGCCCTTGGGGCTGCAAAAATAC GTGTAGACTGCTGCCTGTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCAGAGTTTGGAGCTCATAGGAATGGCTCTCCAGAACTACATGTTATGCTAGC GGAATATGTTTATTCTGAATCTCCTGAGCTGGACATGACTAGAGTATCATATCATTTTGTTAGAGGAAACAACCCGAAGAAGTTTGCATCTACTTTAGTC AATTTTATGGGCAAGTGTTATCCTGGTGAAGATGATTTGGCTATTGCACGAGCAATTTTAATGTATTTAGCTATGGGTAATCTTAGAGATGCTAATTTTC TGATGGATGAGTTAAAGAAGCATGCACAATATAAGGAGCATGACCTTCATCGATCAGATTTGATCCAATTCGTCAATCATCTTCTGCCAACGTTGCAAAG AGATGCTTTACCTCTTTTCAATATGCTGAGAACTAAGTACAAGTCAAGCATAGACAGGGAACCTGCATTCAACGAGCGACTAGATGAAATTGCAGAGTTG TTCTATGGTGTACAACGTAGGAATCCCTTGCAAGGGATGTTTGGAGATATTTTCAAGATGATGGGTTGA
AA sequence Show only first row Show all	>Potri.010G217400.2 pacid=42799928 polypeptide=Potri.010G217400.2.p locus=Potri.010G217400 ID=Potri.010G217400.2.v4.1 annot-version=v4.1 MSRERPRRATLPPAEENIKKLENVINEGNYYGAQQMYKSISARYVSAQRHSEALDILHSGACLQLKNGQVTCGSELAVIYVETLVKAKVPYDDDVLDCIR KIYKTFPQIPLPQDLGEDEDMQQLNEALGAAKIRVDCCLSFLKAAIKWSAEFGAHRNGSPELHVMLAEYVYSESPELDMTRVSYHFVRGNNPKKFASTLV NFMGKCYPGEDDLAIARAILMYLAMGNLRDANFLMDELKKHAQYKEHDLHRSDLIQFVNHLLPTLQRDALPLFNMLRTKYKSSIDREPAFNERLDEIAEL FYGVQRRNPLQGMFGDIFKMMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63220			unknown protein		Potri.010G217400 [exp]	0	1
AT5G20700			Protein of unknown function (D...		Potri.018G146800 [exp]	2.64	0.6306
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.013G020400 [exp]	6.63	0.6177	SNF4.4
AT1G25520			Uncharacterized protein family...		Potri.010G128400 [exp]	8.36	0.6532
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Potri.003G174000 [exp]	10.24	0.6821
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.019G053800 [exp]	10.48	0.6706
AT5G14530			Transducin/WD40 repeat-like su...		Potri.017G071900 [exp]	12.96	0.6300
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.010G098300 [exp]	23.68	0.6004	A1.4
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Potri.012G138600 [exp]	26.60	0.6160
AT1G49980			DNA/RNA polymerases superfamil...		Potri.001G293600 [exp]	32.24	0.5214
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.015G012200 [exp]	32.40	0.6079

Compare expression of checked genes

Potri.010G217400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.