Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16880 676 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 300 / 3e-90 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 300 / 4e-90 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 295 / 5e-90 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 288 / 6e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 284 / 2e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 285 / 4e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 280 / 4e-84 RPF2 rna processing factor 2 (.1) AT1G64100 280 / 7e-84 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT1G12300 278 / 3e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 311 / 1e-94 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 311 / 2e-94 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G044000 [exp] 290 / 1e-93 AT2G16880 190 / 1e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 303 / 4e-92 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 305 / 5e-90 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 298 / 8e-90 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 297 / 8e-90 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 298 / 1e-89 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 297 / 2e-88 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041421 [exp] 868 / 0 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036506 [exp] 857 / 0 AT2G16880 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 321 / 3e-98 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 313 / 7e-95 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 311 / 3e-94 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 307 / 4e-92 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 308 / 4e-91 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 300 / 6e-90 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 299 / 8e-90 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 284 / 3e-84 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G217600.1 pacid=42799185 polypeptide=Potri.010G217600.1.p locus=Potri.010G217600 ID=Potri.010G217600.1.v4.1 annot-version=v4.1 ATGGAAACACCACCACGAGATCCCCAAAATTCTAAACCACAATCAGAACAAGACCTTTTAGGAACCCTAACAAAAATCCTAACTTCAGAAAACGTCTCCT TTGAATCCCTAAAACCCTACATTCCCCATCTCTCCACTAACCCTAGCCTCTTAATCTCTTTATTAAATTCAAAAACCCTAATTCAAAACCCTAACACTCT CCTTCAGTTTTACACATACCTCCCTCCTTCAATTACCCACCACTCACCTCTCCCTCTACTCTCTCTTCTCCCTTCCATTCTCCGGTACCGCCATTTCTAC GCTGCCAAATCCCTTCTTTCCTCCTTTATCCCCGTCGACAAATCGAGCTCCCTTCACTACCTCCTCCTCCACCCCCAAAAAACCAATAACCCCGTCTCCT GTTTGCACATTTCGAAGCCTCTTCTTGATATTTCCATTGGAGCCTATGTTGCGTGCGGTAGGCCCCATCAAGCTGCACAAATTTTTAACAGAATGAAGAG ATTGGGTATGCAGCCTACTTTGTTAACTTGCAATACTTTGTTAAATGCTTTAGTGAGATTCCCGTCTTCGCATTCAATCAGATTGTCTAAAGCTGTCTTT ACTGATTTTATTAAGATTGGTGTTAAGATTAATACGAACAGTTTTAATATTTTGATTCATGGATCTTGCATGGAGAACAGGTTTGGTGAAGCAATAAGGG TTTTGGGTAAAATGCGGGATTATGGATGTCCGCCAGATAATATTACTTATAATACAATTTTGGATGGTTTGTGTAAGAAAGGGAGGTTAAATGAGGCTAG GGATTTGTTGTTGGATATGAAAAATAAAGGGTTGTTCCCGAATAGGACTACGTTTAATATATTGGTCGTGGGGTGTTGTAGGTTAGGGTGGTTAAAGGAG GCAGCGAACGTTATTGAATTAATGTCGCAGAATAGTGTGGTGCCAGATGCTTGGACATATAATGTGATGATTAGTGGGTTTTGTAAACAGGGTAGGATTG CTGAGGCAATGAGGTTAAGGGAAGAGATGGAGAATTTGAAGCTGTCACCCGATGTGGTAACGTATAATACTTTAATTAATGGGTGTTTTGAACATGGGAG TAGTGAGGAGGGGTTTAAATTGATTGAGGAGATGGAAGGGAGAGGAATGAAGCCGAATTCAGTTACTTATAATGTTATGGTTAAGTGGTTTGTGAAGAAA GGGAAAATGGATGAAGTGGATAAGACTGTTAGAAAGATGGAAGAAAGTGGGTGTTTGCCAGATATCGTTACTTATAATACTTTGATAAGTTGGCATTGTA AGGTGGGGAAGATGGATGAAGCATTCCGATTGATGGATGAAATGGGGAGGAAAGGTCTGAAGATGGATGACGTGACTCTTAACACTATGCTTCGTGCCCT CTGTAGGGAGAGGAAGCTTGATGAAGCACACGACTTGCTTTGCAGTGCTCGTAGGCGAGGCTATTTTGTTGATGAAGTTAGTTATGGCACTTTGATCATA GGATATTTTAAGCATGAAAAGGCAAGTCAAGCTTTGAGGCTTTGGGATGAGATGAAGGAGAAAGAGATCATTCCAAGTATTATCACCTATAACTCTATGA TTGCAGGCTTATGCCAAATGGGAAAAACTAATCAAGCAATAGACAAGCTGGATGAACTTCTGGAGAGTGGTTTGGTCCCTGATGAAATTACATACAACAC AATTATTCATGGATATTGCCAGGAGGGTCAAGTTGAGAAAGCATTTCAGTTCCACAACAAAATGGTTGAGAAAAACTTTAAGCCAGATGTAGTTACTTGT AATACTCTTCTTTGTGGGCTCTGCAAAGAAGGTATGCTTGAAAAAGCTCTTAAGCTCTTCAACACATGGATTTCAAAGGGCAAAGATGTTGATGCTGTTT CATACAACACAATAATTTTATCTCTTTGCAAAGAGAAGAGATTTGGGGAAGCCTTTGATCTTCTTGAAGAAATGGAGGAAAAGAAACTAGGACCTGATTG TTATACATATAATGCCATTCTCGGTGGACTTACTGATGCTGGAAGGATGAAGGATGCAGAGGAGTTCATATCAAAAATTGCTGAGAAAGGAAAATCGGAG AATCAGTTCTTAGAATTGGGGAAGAGGCAGGATGCAAGGACCAGTGAGATTCCCCAGGAACCTCATCCAAATGCGATTGCTTATTCAAACAAGATTAATG AGCTTTGTTCTCAAGGGAGGTACAAGGATGCAATGAAAATATTCCATGAATCGACTCAAAAGAACATCATCTTACTTAAATCTACTTACATTGATCTGAT GGATGGCCTTATTAAGAGGAGGAAAAGCACATCAAAAGGCATGTTATCTTCGTGA
AA sequence Show only first row Show all	>Potri.010G217600.1 pacid=42799185 polypeptide=Potri.010G217600.1.p locus=Potri.010G217600 ID=Potri.010G217600.1.v4.1 annot-version=v4.1 METPPRDPQNSKPQSEQDLLGTLTKILTSENVSFESLKPYIPHLSTNPSLLISLLNSKTLIQNPNTLLQFYTYLPPSITHHSPLPLLSLLPSILRYRHFY AAKSLLSSFIPVDKSSSLHYLLLHPQKTNNPVSCLHISKPLLDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVF TDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKE AANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKK GKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLII GYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTC NTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSE NQFLELGKRQDARTSEIPQEPHPNAIAYSNKINELCSQGRYKDAMKIFHESTQKNIILLKSTYIDLMDGLIKRRKSTSKGMLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.010G217600 [exp]	0	1
AT2G16940			Splicing factor, CC1-like (.1....		Potri.004G177000 [exp]	6.32	0.8317
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	10.09	0.8125
AT2G35540			DNAJ heat shock N-terminal dom...		Potri.003G097800 [exp]	12.12	0.8105
AT5G12230		MED19A	unknown protein		Potri.009G156200 [exp]	12.16	0.7493
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Potri.014G086700 [exp]	14.14	0.7472
AT4G10600			RING/FYVE/PHD zinc finger supe...		Potri.001G448900 [exp]	16.73	0.7953
AT5G55660			DEK domain-containing chromati...		Potri.001G367400 [exp]	16.88	0.8066
AT3G63500			Protein of unknown function (D...		Potri.009G059000 [exp]	19.26	0.7988
					Potri.003G148601 [exp]	22.97	0.8077
AT5G12400			DNA binding;zinc ion binding;D...		Potri.001G254300 [exp]	24.37	0.7957

Compare expression of checked genes

Potri.010G217600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.