Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52300 282 / 8e-99 ATPQ "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043800 [exp] 322 / 2e-114 AT3G52300 291 / 3e-102 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038474 [exp] 302 / 1e-106 AT3G52300 297 / 7e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10023337 [exp] 300 / 7e-106 AT3G52300 298 / 2e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10023492 [exp] 290 / 6e-102 AT3G52300 295 / 8e-104 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10040374 [exp] 288 / 2e-101 AT3G52300 293 / 3e-103 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05873 [poplar] [flax] Mt_ATP-synt_D ATP synthase D chain, mitochondrial (ATP5H)
Representative CDS sequence Show only first row Show all	>Potri.010G217800.1 pacid=42797779 polypeptide=Potri.010G217800.1.p locus=Potri.010G217800 ID=Potri.010G217800.1.v4.1 annot-version=v4.1 ATGAGCGGACCTTCAAAGAAAGTAGTGGATGTGGCATTTAAAGCATCGAAAACCGTTGATTGGGATGGGATGGCCAAGCTTTTAGTCTCCGATGAGGCTC GCAAAGAGTTCGCTACTCTTCGTCGCGCTTTCAACGAAGTTAACGCCCAACTCGGGACCAAGTTCAGCCAGGAACCCGAACCCATAGACTGGGAATCTTA CAGAAAAGGAATTGGCTCTCGCTTGGTGGACATGTACAAACAGGCATATGAAAGCGTAGAGATCCCTAAGTTTGAAGACAAAACGACTCCAGAATACAAG CCTAAATTTGATCAATTGTTGGTGGATTTGAAAGAAGCAGAGCAACAATCCCTGAAGGAGTCTGAGCGCTTGGATAAAGAAATTGCTGATGTTCAAGAAT TGAAGAAAAAAATCAGCACCATGACTGCAGAAGAGTACTTCGAGAAGCATCCTGAGCTGAAGAAAAAGTTTGATGATGAAATCCGTAATGACTATTGGGG TTATTGA
AA sequence Show only first row Show all	>Potri.010G217800.1 pacid=42797779 polypeptide=Potri.010G217800.1.p locus=Potri.010G217800 ID=Potri.010G217800.1.v4.1 annot-version=v4.1 MSGPSKKVVDVAFKASKTVDWDGMAKLLVSDEARKEFATLRRAFNEVNAQLGTKFSQEPEPIDWESYRKGIGSRLVDMYKQAYESVEIPKFEDKTTPEYK PKFDQLLVDLKEAEQQSLKESERLDKEIADVQELKKKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Potri.010G217800 [exp]	0	1
AT2G20820			unknown protein		Potri.013G146000 [exp]	1.41	0.9515
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.001G171200 [exp]	1.41	0.9511
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Potri.002G248200 [exp]	2.44	0.9479
AT2G20820			unknown protein		Potri.019G109100 [exp]	3.46	0.9437
AT5G44710			unknown protein		Potri.003G155000 [exp]	4.69	0.9149
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Potri.010G081700 [exp]	4.79	0.9138
AT5G52840			NADH-ubiquinone oxidoreductase...		Potri.004G071900 [exp]	5.47	0.9461
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Potri.007G079500 [exp]	5.65	0.9232
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.001G315800 [exp]	6.70	0.9380
AT4G37830			cytochrome c oxidase-related (...		Potri.007G008800 [exp]	7.48	0.9422

Compare expression of checked genes

Potri.010G217800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.