Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35800 1041 / 0 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT2G26360 403 / 2e-133 Mitochondrial substrate carrier family protein (.1) AT1G34065 136 / 9e-35 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G39460 133 / 7e-34 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G74240 124 / 2e-30 Mitochondrial substrate carrier family protein (.1) AT5G42130 109 / 2e-25 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT4G11440 111 / 4e-25 Mitochondrial substrate carrier family protein (.1) AT5G61810 108 / 1e-24 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G51050 107 / 3e-24 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G32400 97 / 4e-21 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043700 [exp] 1482 / 0 AT2G35800 1044 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 137 / 2e-35 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 129 / 1e-32 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.015G108900 [exp] 116 / 5e-27 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 114 / 1e-26 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 111 / 3e-25 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G189600 [exp] 108 / 3e-25 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 106 / 1e-24 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.014G135530 [exp] 90 / 2e-19 AT4G03115 422 / 2e-149 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040375 [exp] 1128 / 0 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 1119 / 0 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 134 / 2e-34 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 128 / 5e-32 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10017849 [exp] 112 / 1e-26 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 111 / 2e-25 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 108 / 6e-25 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 103 / 7e-23 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 101 / 2e-22 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 86 / 1e-17 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.010G217900.1 pacid=42797523 polypeptide=Potri.010G217900.1.p locus=Potri.010G217900 ID=Potri.010G217900.1.v4.1 annot-version=v4.1 ATGTTGTCTACAAATGATCCAATGGAGTCCTTTATGAATTCAATTCAAGTGGTCAAAGATGCACTTTCACCACTTGAACTCGGGATTCGGAAAGCTGCTA AAGATCTTGAAACTTGTTGGGGGGTTTCAAAGAATGATGATAAGGCAACCCATGATCTAGTTACTGATAATAGCAGCAAAGTTTCTATCTTTACTGTGAA AAATAAGAGTGTTAGTCTTGGAAATAGTGAGAATAGGCAGGGTGTGGTTAATGAAGAGAAAAAGAAAGGATTTTTATCTATTAAGTTTCCTATTAGGAGT TTGTTGGGGATGTTTTCTATGAATTTGGAAGGTGGGCATAGAAATGGAGGTGATAATAAGGCTGGGCTTCCGAAGAAAGTCTTGAAAGAGAAGGAAATGA GTAATGAAGACGGGTCTTGTGTAAATTGTTTGCGGTTTGCCATGACTTTGTCTTTGTTGGTTAATGGTTTGGTTCAGGCATTTCCTGGCCCATTTAAGAT GAACAAGAAACGGTTTCAGAAAGTAGGTGACGAGGATAAAGATTATTTGCATTCGTCCAAAAATGGGTCGAAAGCTAAGGTTTCAGGTGAAATGAAGCTA AGGAAATCAAAGGGTCAATCTGTTAAAGGGTACCAGAATGTGAGTGAGAAGGGTAAGGAGGAGAAACCTGTGTCCCTCGAATGCTTTATAGGGTTTCTAT TTGACCAATTGGCTCAGAATCTACAGAAGTTTGATCTGGGTTTACAGGAAAGAGATATCAAGGGTTGTGAAAATGATTGTTCAACCTCACCTCCAGCATA CTCCCAGTTTGATCATTTGAGGGCAATCATAAGTATTTGGGAAGGTCAAAAGGTGTATGTAGATGGGGTTTTGGGAAATTTGAGTTTTGCGAGAGTGGGT GGTGTGCCATCAAGTATAGTTGGAGTATCCTCTTCAGTTAATGAAGAGGGTGATGATGGTGCAAGTAGTGCACCTACCAACAGCGCTGAGGACACAGGGA GTAGTTCACCACAGAATCTAGCAAGTGGGTTACTGAGCATTCCGCTATCAAATGTAGAGCGTTTGAGATCCACATTATCTACTGTTTCATTGACGGAGCT AATTGAGCTTGTGCCACAACTTGGTCGATCTTCTAAAGACTATCCTGACAAGAAAAAGCTATTCTCTGTCCAGGATTTCTTTAGATACACAGAGGCTGAA GGAAGAAGATTCTTTGAGGAACTTGACAGAGATGGTGATGGTCAAGTGAATTTGGAAGATCTTGAAATCGCATTGAGAAAGAGAAAATTGCCCCAGAGAT ATGCCCGGGAATTCATGCGGCGTGCTAGAAGTCACTTGTTCTCAAAATCATTTGGGTGGAAACAATTTTTGTCCTTGATGGAACAGAAGGAACCAACAAT TCTGCGTGCTTACACTTCTCTGTGTTTAAGCAAGTCTGGGACCCTGCAAAAGAGTGAAATATTGGCATCACTAAAAAATTCTGGACTTCCAGTGAATGAA GACAATGCTGTTGCTATGATGCGATTTCTGAATGCTGATACAGAAGAATCTATTTCTTATGGGCATTTTCGTAATTTTATGCTTTTGCTGCCTTCTGATC GACTTCAAGATGATCCCAGGAATATATGGTTTGAAGCAGCAACTGTTGTTGCCGTTGCACCACCCGTGGAAATACCTGCTGGAAGCGTTTTACGATCTGC ATTGGCCGGGGGTCTTTCATGTGCACTCTCTTGTTCTCTTATGCACCCTGTTGATACAATAAAGACTCGGGTGCAAGCTTCAACATTGGCCTTCCCAGAA ATAATTTCAAAGCTTCCACAAGTTGGAGTTCGAGGATTGTATAGGGGTTCAATTCCTGCAATTTGGGGACAGTTTACAAGCCACGGCTTGCGAACTGGGA TATTTGAAGCTACCAAACTTGTGCTAATAAATGTTGCCCCAACACTCCCAGATATCCAGGTTCAATCTGTAGCATCATTATGCAGCACAGTTTTGGGGAC AGCAGTGCGGATCCCTTGTGAGGTATTGAAGCAGCGTTTGCAGGCTGGCCTTTTTGACAATGTAGGACAGGCTATTGTTGGTACATGGCAGCAAGATGGC CTAAATGGGTTCTTTCGTGGGACTGGTGCCACTCTTCTCCGTGAGGTTCCATTTTATGTTGCTGGCATGTGTCTATATGGTGAATCCAAGAAGGTTGCTC AACAACTTTTAAGGCGGGAGCTGGAACCCTGGGAAACAATTGCTGTTGGGGCTTTATCTGGAGGCCTAACTGCTGTTATCACTACCCCTTTCGATGTACT GAAAACTAGAATGATGACGGCGCCACCAGGAAGAACTGTATCAATGTCATTGATAGCTTTCTCTATACTCCGACATGAGGGGCCCCTTGGCTTATTCAAA GGAGCAGTGCCGAGGTTCTTCTGGATTGCTCCCTTAGGTGCCATGAACTTTGCAGGCTATGAGCTAGCAAGGAAGGCCATGGACAAAAACGAGGAGGCCA CAAAAGTTGAGTAG
AA sequence Show only first row Show all	>Potri.010G217900.1 pacid=42797523 polypeptide=Potri.010G217900.1.p locus=Potri.010G217900 ID=Potri.010G217900.1.v4.1 annot-version=v4.1 MLSTNDPMESFMNSIQVVKDALSPLELGIRKAAKDLETCWGVSKNDDKATHDLVTDNSSKVSIFTVKNKSVSLGNSENRQGVVNEEKKKGFLSIKFPIRS LLGMFSMNLEGGHRNGGDNKAGLPKKVLKEKEMSNEDGSCVNCLRFAMTLSLLVNGLVQAFPGPFKMNKKRFQKVGDEDKDYLHSSKNGSKAKVSGEMKL RKSKGQSVKGYQNVSEKGKEEKPVSLECFIGFLFDQLAQNLQKFDLGLQERDIKGCENDCSTSPPAYSQFDHLRAIISIWEGQKVYVDGVLGNLSFARVG GVPSSIVGVSSSVNEEGDDGASSAPTNSAEDTGSSSPQNLASGLLSIPLSNVERLRSTLSTVSLTELIELVPQLGRSSKDYPDKKKLFSVQDFFRYTEAE GRRFFEELDRDGDGQVNLEDLEIALRKRKLPQRYAREFMRRARSHLFSKSFGWKQFLSLMEQKEPTILRAYTSLCLSKSGTLQKSEILASLKNSGLPVNE DNAVAMMRFLNADTEESISYGHFRNFMLLLPSDRLQDDPRNIWFEAATVVAVAPPVEIPAGSVLRSALAGGLSCALSCSLMHPVDTIKTRVQASTLAFPE IISKLPQVGVRGLYRGSIPAIWGQFTSHGLRTGIFEATKLVLINVAPTLPDIQVQSVASLCSTVLGTAVRIPCEVLKQRLQAGLFDNVGQAIVGTWQQDG LNGFFRGTGATLLREVPFYVAGMCLYGESKKVAQQLLRRELEPWETIAVGALSGGLTAVITTPFDVLKTRMMTAPPGRTVSMSLIAFSILRHEGPLGLFK GAVPRFFWIAPLGAMNFAGYELARKAMDKNEEATKVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	0	1
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.007G074800 [exp]	4.24	0.7332
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G224075 [exp]	4.89	0.8105
AT5G11020			Protein kinase superfamily pro...		Potri.006G260100 [exp]	5.29	0.7540
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.005G014000 [exp]	16.73	0.7102
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.017G110400 [exp]	17.32	0.7672
AT2G35920			RNA helicase family protein (....		Potri.016G068900 [exp]	17.43	0.6757
AT3G49400			Transducin/WD40 repeat-like su...		Potri.012G021900 [exp]	20.14	0.7092
AT2G32910			DCD (Development and Cell Deat...		Potri.005G042700 [exp]	20.19	0.7754
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004166 [exp]	21.26	0.7878
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	21.56	0.7084	ATHMG.2

Compare expression of checked genes

Potri.010G217900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.