Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03040 323 / 7e-106 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 305 / 5e-99 IQD3 IQ-domain 3 (.1) AT3G09710 266 / 1e-83 IQD1 IQ-domain 1 (.1.2) AT2G26410 180 / 1e-50 IQD4 IQ-domain 4 (.1) AT2G33990 129 / 6e-34 IQD9 IQ-domain 9 (.1) AT3G22190 124 / 6e-31 IQD5 IQ-domain 5 (.1.2) AT2G26180 123 / 1e-30 IQD6 IQ-domain 6 (.1) AT3G15050 116 / 1e-29 IQD10 IQ-domain 10 (.1) AT4G00820 115 / 3e-27 IQD17 IQ-domain 17 (.1) AT2G43680 110 / 1e-25 IQD14 IQ-domain 14 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086300 [exp] 394 / 3e-133 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 387 / 1e-130 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.013G127200 [exp] 141 / 3e-36 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.019G095700 [exp] 139 / 7e-36 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.006G226600 [exp] 137 / 2e-35 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G215200 [exp] 135 / 1e-34 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.002G178500 [exp] 128 / 8e-32 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.011G096500 [exp] 122 / 2e-31 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.009G015800 [exp] 125 / 3e-31 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041419 [exp] 473 / 5e-165 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 467 / 2e-161 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 333 / 4e-110 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 337 / 7e-110 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10015067 [exp] 236 / 1e-74 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 125 / 3e-31 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10013362 [exp] 120 / 2e-29 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10015068 [exp] 114 / 3e-29 AT5G03040 202 / 4e-63 IQ-domain 2 (.1.2.3) Lus10025593 [exp] 117 / 8e-28 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10027059 [exp] 117 / 9e-28 AT3G59690 496 / 1e-171 IQ-domain 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G218100.3 pacid=42797135 polypeptide=Potri.010G218100.3.p locus=Potri.010G218100 ID=Potri.010G218100.3.v4.1 annot-version=v4.1 ATGGGGAAAAGAGGGAGTTGGTTCTCTGCTTTGAAGAAAGCCCTCGGTTCCTCTAAGAAATCCAAATCAAAGAAGAAATGGTCAGAAAAAGAGAAGAACC GGGATCTAGGTGTTTCTTCACATGAAGAAACCGTTGCACCCTCTCTTTCTCCTCCTCGTACACCACCTCCTCCTACAGCAGAAGATGTGAAATTAACTGA AGCTGAGAACGAGCAGAGCAAGCATGCTTATTCCGTGGCGCTTGCCACTGCTGTGGCAGCTGAGGCAGCTGTTGCAGCCGCCCAGGCTGCCGCTGAGGTT GTTCGGCTTACTACAGTGGCACATTACTCTGGAAAATCGAAGGAGGAAATAGCTGCAATCAGGATTCAAACAGCATTTAGAGGATACCTGGCGAGGAGGG CATTACGTGCTTTGAGAGGGCTGGTGAGATTGAAGTCATTGATACAAGGGCAATCTGTCAAACGGCAAGCAACTGCCACATTACGAGCCATGCAGACTCT TGCTCGTGTGCAGTCTCAGATTCGTGCAAGAAGGATCAGAATGTCCGAGGAAAATGAGGCCCTCCAACGGCAGCTCCAGCAGAAACATGACAAAGAACTT GAGAAGTTGAGAACTTCTATTGGAGAACAATGGGATGATAGCCCACAATCAAAGGAAGAAGTTGAAGCCAGCCTACTACAAAAGCAAGAAGCTGCCATGA GAAGAGAAAGGGCACTGGCTTATGCATACTCGCATCAGCAAATGTGGAAGCAATCTTCAAAATCAGCAAATGCTACATTCATGGATCCAAACAATCCTCG TTGGGGATGGAGTTGGTTAGAGAGGTGGATGGCAGCCCGACCTTGGGAGAGCCGAAGCACAATAGATAACAATGATCGGGCCTCTGTTAAGAGTACAACA AGCCGTACCATGTCTCTTGGAGAAATCAGCAGAGCTTATTCTCGTCGTGATCTTAACCATGACAATAAAGCTTCTCCTGGTGCGCAAAAATCAAGTCGGC CTCCCAGTCGGCAATCACCTTCTACTCCCCCCTCTAAGGCACCATCTACATCTTCAGTAACAGGGAAAGCAAAGCCACCAAGCCCTAGAGGGAGTGCTTG GGGAGGAGACGAGGACTCCAGGAGCACATTCAGTGTCCAGTCTGAGCGCTATCGGAGACATAGCATAGCAGGGTCATCAATAAGAGATGATGAGAGTCTT GCAAGTTCGCCTTCAGTTCCAAGTTACATGGCACCCACACGGTCACAGTCAGCAAAGGCAAAATCCCGCTTGTCAAGCCCGTTAGGCATAGATAATAATG GGACACCAGATAAGGCATCAGTGGGTTATGTAAAGAAGCGGCTTTCCTTCTCTGCTTCACCAGCTGGAGCAAGGAGACACTCTGGTCCTCCTAGGGTGGA TGCCAGTGCTGTTAAAGACATTCAAATGCACAGAGAAGAGAAAATGAGCAATGGAGCAAGCAGCAAGTAG
AA sequence Show only first row Show all	>Potri.010G218100.3 pacid=42797135 polypeptide=Potri.010G218100.3.p locus=Potri.010G218100 ID=Potri.010G218100.3.v4.1 annot-version=v4.1 MGKRGSWFSALKKALGSSKKSKSKKKWSEKEKNRDLGVSSHEETVAPSLSPPRTPPPPTAEDVKLTEAENEQSKHAYSVALATAVAAEAAVAAAQAAAEV VRLTTVAHYSGKSKEEIAAIRIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATATLRAMQTLARVQSQIRARRIRMSEENEALQRQLQQKHDKEL EKLRTSIGEQWDDSPQSKEEVEASLLQKQEAAMRRERALAYAYSHQQMWKQSSKSANATFMDPNNPRWGWSWLERWMAARPWESRSTIDNNDRASVKSTT SRTMSLGEISRAYSRRDLNHDNKASPGAQKSSRPPSRQSPSTPPSKAPSTSSVTGKAKPPSPRGSAWGGDEDSRSTFSVQSERYRRHSIAGSSIRDDESL ASSPSVPSYMAPTRSQSAKAKSRLSSPLGIDNNGTPDKASVGYVKKRLSFSASPAGARRHSGPPRVDASAVKDIQMHREEKMSNGASSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	0	1
AT1G14020			O-fucosyltransferase family pr...		Potri.010G164700 [exp]	1.41	0.9605
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	2.44	0.9609
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	3.00	0.9550
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.019G130000 [exp]	4.00	0.9535
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Potri.001G007800 [exp]	6.00	0.9419	PP2.4
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.008G128600 [exp]	7.00	0.9493
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.002G181300 [exp]	8.94	0.9397
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	9.38	0.9480
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	9.48	0.9498	Pt-FLA11.2
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Potri.008G208000 [exp]	9.89	0.9238

Compare expression of checked genes

Potri.010G218100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.