Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60390 877 / 0 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 877 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 877 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 877 / 0 GTP binding Elongation factor Tu family protein (.1) AT1G18070 292 / 1e-93 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 286 / 9e-90 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G35550 179 / 2e-55 elongation factor Tu C-terminal domain-containing protein (.1) AT4G20360 165 / 1e-45 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 164 / 2e-45 GTP binding Elongation factor Tu family protein (.1) AT2G31060 74 / 8e-14 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219500 [exp] 927 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 927 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 913 / 0 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 908 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 905 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 905 / 0 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.006G130900 [exp] 902 / 0 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.016G086500 [exp] 484 / 8e-173 AT5G60390 479 / 5e-171 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.019G062500 [exp] 296 / 3e-95 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019918 [exp] 897 / 0 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 873 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 873 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023174 [exp] 872 / 0 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 803 / 0 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10015070 [exp] 691 / 0 AT1G07930 684 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10020153 [exp] 309 / 3e-98 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026952 [exp] 309 / 8e-94 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041996 [exp] 289 / 3e-92 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 288 / 3e-91 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03143 [poplar] [flax] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Potri.010G218800.3 pacid=42797814 polypeptide=Potri.010G218800.3.p locus=Potri.010G218800 ID=Potri.010G218800.3.v4.1 annot-version=v4.1 ATGGGTAAAGAGAAGACTCACATCAACATCGTGGTCATTGGCCATGTGGACTCTGGAAAGTCAACCACCACTGGCCACTTGATCTACAAGCTTGGAGGTA TTGACAAGCGTGTCATTGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCG CGAGCGTGGTATCACCATTGATATTGCCCTGTGGAAGTTTGAGACCACCAGGTACTACTGCACTGTCATTGATGCCCCTGGACATCGTGACTTTATCAAG AACATGATTACTGGGACTTCCCAGGCTGACTGTGCCGTGCTTATCATTGATTCCACCACTGGTGGTTTCGAAGCTGGTATCTCCAAGGATGGCCAGACCC GTGAGCACGCTCTTCTTGCTTTTACCCTCGGTGTGAAGCAAATGATATGCTGTTGTAACAAGATGGATGCCACCACTCCAAAATACTCCAAGGCAAGGTA TGATGAAATTGTCAAGGAAGTGTCCTCCTACTTGAAGAAGGTTGGTTACAACCCTGACAAGATTCCCTTTGTCCCAATCTCTGGATTTGAGGGTGACAAC ATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGCCCAACACTCCTGGATGCCCTTGACCAGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCCC TCCGTCTCCCACTTCAGGATGTGTACAAGATTGGTGGTATCGGAACTGTCCCAGTGGGTCGTGTTGAAACTGGTGTCATCAAGCCCGGCATGGTTGTCAC ATTCGGTCCAACTGGACTGAGTACTGAAGTGAAGTCTGTTGAGATGCACCACGAGGCTCTCCTAGAGGCTCTTCCTGGTGACAATGTCGGGTTCAATGTT AAGAATGTAGCTGTTAAGGATCTGAAGCGTGGTTTTGTGGCCTCAAACTCCAAGGACGATCCTGCGAGGGAAGCTGCCAACTTCACCTCCCAGGTTATCA TCATGAACCATCCTGGACAGATCGGAAACGGTTACGCTCCAGTCCTTGACTGCCACACCTGTCACATTGCTGTGAAGTTTGCTGAGATCCTCACCAAGAT TGACAGGCGGTCTGGTAAGGAACTGGAGAAGGAGCCCAAGTTCCTGAAGAACGGTGATGCTGGTATGATCAAGATGATTCCCACCAAGCCCATGGTGGTG GAGACTTTCTCAGCGTATCCTCCACTTGGTCGTTTTGCTGTGAGGGACATGCGCCAGACCGTTGCTGTGGGAGTTATCAAGAGCGTGGAGAAGAAGGATC CCTCTGGTGCTAAGGTGACCAAATCTGCTGCCAAGAAGGGTGCCAAGTGA
AA sequence Show only first row Show all	>Potri.010G218800.3 pacid=42797814 polypeptide=Potri.010G218800.3.p locus=Potri.010G218800 ID=Potri.010G218800.3.v4.1 annot-version=v4.1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIK NMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDN MIERSTNLDWYKGPTLLDALDQIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLSTEVKSVEMHHEALLEALPGDNVGFNV KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMIKMIPTKPMVV ETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKGAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	0	1
AT5G60390			GTP binding Elongation factor ...		Potri.010G219500 [exp]	1.00	0.9126
AT5G39850			Ribosomal protein S4 (.1)		Potri.006G209700 [exp]	1.41	0.8666
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.017G059000 [exp]	1.73	0.8661
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Potri.009G082100 [exp]	2.00	0.8623
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Potri.010G255200 [exp]	3.00	0.8078
AT5G60390			GTP binding Elongation factor ...		Potri.010G218600 [exp]	3.87	0.8452
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013000 [exp]	6.48	0.8436
AT2G35605			SWIB/MDM2 domain superfamily p...		Potri.013G070600 [exp]	6.63	0.7876
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Potri.002G261900 [exp]	8.83	0.7742
AT5G60390			GTP binding Elongation factor ...		Potri.010G218700 [exp]	9.16	0.8371

Compare expression of checked genes

Potri.010G218800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.