Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35790 240 / 3e-79 unknown protein AT5G60390 115 / 3e-29 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 115 / 3e-29 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 114 / 4e-29 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 114 / 4e-29 GTP binding Elongation factor Tu family protein (.1) AT1G35550 77 / 1e-17 elongation factor Tu C-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219400 [exp] 397 / 3e-141 AT2G35790 243 / 2e-81 unknown protein Potri.008G042800 [exp] 349 / 3e-122 AT2G35790 231 / 1e-76 unknown protein Potri.010G218700 [exp] 137 / 3e-37 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 137 / 3e-37 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 137 / 3e-37 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 130 / 8e-35 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 129 / 4e-34 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 128 / 7e-34 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 127 / 1e-33 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023498 [exp] 245 / 3e-81 AT2G35790 282 / 2e-96 unknown protein Lus10040379 [exp] 223 / 1e-72 AT2G35790 266 / 3e-90 unknown protein Lus10015070 [exp] 115 / 6e-30 AT1G07930 684 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 114 / 5e-29 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10019918 [exp] 113 / 2e-28 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 113 / 2e-28 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023174 [exp] 112 / 3e-28 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 112 / 6e-28 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06979 [poplar] [flax] TMEM70 Assembly, mitochondrial proton-transport ATP synth complex
Representative CDS sequence Show only first row Show all	>Potri.010G219000.2 pacid=42799790 polypeptide=Potri.010G219000.2.p locus=Potri.010G219000 ID=Potri.010G219000.2.v4.1 annot-version=v4.1 ATGGTCACCTTAGCACCAGAGGGATCCTTCTTCTCCACGTTCTTGATAACTCCCACAGCAACGGTCTGGCGCATGTCCCTCACAGCAAAACGACCAAGTG GAGGATACGCTGAGAAAGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTGATCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCCAG CTATCATCCTTGTCGGTTTGGCACATGGCCACACGATCAGTGTGCCAAACTCAACTTCAACCATGCCAGTCTCACTGCTACTCAGAAAAGATGGGCATCT CGAGCTACAACAACAAAAGATGACAATAAGATCAGCATTGGACCACGCCGAGGGAAGGAAGCAGGAGAAGATGAAAAAGAAACTGGGGTGGTGTATTATG GTCCAATCACATCCACCATCAAGAAAGTAAAAATGCTCTCTCTTTCAACATGCTGTCTGTCTGTATCCTTGGGTCCGGTTGTAACTTTTATGACATCTCA AGATACAAATGTCATCCTGAAGGGGGCAGTTGCATCTTCTGTTATATTCTTCAGTGCTTCAACCACTGCTGCTCTGCACTGGTTTGTTAGCCCCTACATT CACAAGCTTAGATGGCAGCCCGGCTCAGATAGTTTTGAAGTGGAGATGATGTCCTGGTTAGCAACCTACATTCCAAAGACTATCAAATTTGCTGATATCC GGCTTCCAGAAACCAACAGGCCCTTTGTGACTTTTAAGGCGAACGGAAATTTCTACTTCGTTGATTCAGAGCACTGTCATAACAAGGCATTGTTGAATAG ACTAACCCCACAGAAATCAGCTCACGAGTCTGCTTTCAAAAATTTGTGA
AA sequence Show only first row Show all	>Potri.010G219000.2 pacid=42799790 polypeptide=Potri.010G219000.2.p locus=Potri.010G219000 ID=Potri.010G219000.2.v4.1 annot-version=v4.1 MVTLAPEGSFFSTFLITPTATVWRMSLTAKRPSGGYAEKVSTTMGLVGIILIIPASPFFRNLGSFSSYHPCRFGTWPHDQCAKLNFNHASLTATQKRWAS RATTTKDDNKISIGPRRGKEAGEDEKETGVVYYGPITSTIKKVKMLSLSTCCLSVSLGPVVTFMTSQDTNVILKGAVASSVIFFSASTTAALHWFVSPYI HKLRWQPGSDSFEVEMMSWLATYIPKTIKFADIRLPETNRPFVTFKANGNFYFVDSEHCHNKALLNRLTPQKSAHESAFKNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35790			unknown protein		Potri.010G219000 [exp]	0	1
AT5G15200			Ribosomal protein S4 (.1.2)		Potri.006G209801 [exp]	4.47	0.9387
AT5G56670			Ribosomal protein S30 family p...		Potri.015G084700 [exp]	9.16	0.9212	RPS30.1
AT3G02560			Ribosomal protein S7e family p...		Potri.016G100400 [exp]	10.29	0.9408
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.012G051300 [exp]	10.81	0.9280
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.019G099000 [exp]	10.95	0.9400
AT3G05560			Ribosomal L22e protein family ...		Potri.010G012700 [exp]	12.64	0.9287	RPL22.5
AT2G21160			Translocon-associated protein ...		Potri.009G129800 [exp]	15.29	0.9190
AT3G01790			Ribosomal protein L13 family p...		Potri.001G334000 [exp]	18.11	0.9040
AT2G09990			Ribosomal protein S5 domain 2-...		Potri.001G304700 [exp]	18.70	0.9376	RPS16.3
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.003G102800 [exp]	19.28	0.9369	ATBBC1.3

Compare expression of checked genes

Potri.010G219000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.