Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35790 244 / 1e-81 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219000 [exp] 397 / 2e-141 AT2G35790 239 / 3e-79 unknown protein Potri.008G042800 [exp] 392 / 3e-140 AT2G35790 231 / 1e-76 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023498 [exp] 256 / 5e-86 AT2G35790 282 / 2e-96 unknown protein Lus10040379 [exp] 232 / 9e-77 AT2G35790 266 / 3e-90 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06979 [poplar] [flax] TMEM70 Assembly, mitochondrial proton-transport ATP synth complex
Representative CDS sequence Show only first row Show all	>Potri.010G219400.1 pacid=42799827 polypeptide=Potri.010G219400.1.p locus=Potri.010G219400 ID=Potri.010G219400.1.v4.1 annot-version=v4.1 ATGGCGAGAGGAGCGGCTCTTCTTCATTTGCTTCGATCTCAAAGCAAACAGCTCTCAACCATCAGAAACTTCCACTCAGGCTATCATCCTTGTCGGTTTG GCACATGGCCACACGATCAGTGTGCCAAACTCAACTTCAACCATGCCAGTCTCACTGCTACTCAGAAAAGATGGGCATCTCGAGCTACAACAACAAAAGA TGACAATAAGATCAGCATTGGACCACGCCGAGGGAAGGAAGCAGGAGAAGATGAAAAAGAAACTGGGGTGGTGTATTATGGTCCAATCACATCCACCATC AAGAAAGTAAAAATGCTCTCTCTTTCAACATGCTGTCTGTCTGTATCCTTGGGTCCGGTTGTAACTTTTATGACATCTCAAGATACAAATGTCATCCTGA AGGGGGCAGTTGCATCTTCTGTTATATTCTTCAGTGCTTCAACCACTGCTGCTCTGCACTGGTTTGTTAGCCCCTACATTCACAAGCTTAGATGGCAGCC CGGCTCAGATAGTTTTGAAGTGGAGATGATGTCCTGGTTAGCAACCTACATTCCAAAGACTATCAAATTTGCTGATATCCGGCTTCCAGAAACCAACAGG CCCTTTGTGACTTTTAAGGCGAACGGAAATTTCTACTTCGTTGATTCAGAGCACTGTCATAACAAGGCATTGTTGAATAGACTAACCCCACAGAAATCAG CTCACGAGTCTGCTTTCAAAAATTTGTGA
AA sequence Show only first row Show all	>Potri.010G219400.1 pacid=42799827 polypeptide=Potri.010G219400.1.p locus=Potri.010G219400 ID=Potri.010G219400.1.v4.1 annot-version=v4.1 MARGAALLHLLRSQSKQLSTIRNFHSGYHPCRFGTWPHDQCAKLNFNHASLTATQKRWASRATTTKDDNKISIGPRRGKEAGEDEKETGVVYYGPITSTI KKVKMLSLSTCCLSVSLGPVVTFMTSQDTNVILKGAVASSVIFFSASTTAALHWFVSPYIHKLRWQPGSDSFEVEMMSWLATYIPKTIKFADIRLPETNR PFVTFKANGNFYFVDSEHCHNKALLNRLTPQKSAHESAFKNL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35790			unknown protein		Potri.010G219400 [exp]	0	1
AT3G06610			DNA-binding enhancer protein-r...		Potri.008G105000 [exp]	2.00	0.8859
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.004G223800 [exp]	3.00	0.8234
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Potri.007G071700 [exp]	3.60	0.8911
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.001G440100 [exp]	4.89	0.8420
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.010G199000 [exp]	9.59	0.7978
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.004G113600 [exp]	9.79	0.8083
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.017G075200 [exp]	10.58	0.7384
AT2G20690			lumazine-binding family protei...		Potri.013G131800 [exp]	11.53	0.8371
AT5G61220			LYR family of Fe/S cluster bio...		Potri.009G079800 [exp]	14.28	0.8513
AT2G01640			unknown protein		Potri.009G097000 [exp]	14.31	0.7782

Compare expression of checked genes

Potri.010G219400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.