Plant FIBer expression Database

Potri.010G219600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60410 733 / 0 ATSIZ1, SIZ1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
AT5G41580 67 / 3e-11 RING/U-box superfamily protein (.1)
AT1G08910 47 / 6e-05 EMB3001 zinc ion binding;zinc ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G042300
[exp]
1418 / 0 AT5G60410 775 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Potri.004G210200
[exp]
800 / 0 AT5G60410 1146 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Potri.009G015000
[exp]
783 / 0 AT5G60410 1148 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Potri.003G133000
[exp]
67 / 6e-11 AT5G41580 466 / 1e-151 RING/U-box superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038464
[exp]
660 / 0 AT5G60410 1006 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Lus10023344
[exp]
634 / 0 AT5G60410 928 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Lus10036123
[exp]
605 / 0 AT5G60410 913 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Lus10011634
[exp]
560 / 0 AT5G60410 847 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0306 HeH PF02037 SAP SAP domain
CL0229 RING PF02891 zf-MIZ MIZ/SP-RING zinc finger
Representative CDS sequence
>Potri.010G219600.6 pacid=42799361 polypeptide=Potri.010G219600.6.p locus=Potri.010G219600 ID=Potri.010G219600.6.v4.1 annot-version=v4.1
ATGGAGATGAATTTAGTGGCTAGTTGCAAGGGAAAGTTGGCATATTTTAGAATTAAAGAGCTCAAGGATATTTTATCCCTGTTGGGTCTTTCAAAGCAAG
GGAAGAAGCAGGATTTAATGGACAGAGTTTTGGGTTTGCTCTCAGATGATGAAATTTGCTCCGCTCGCAGCTTTGTAAGGAAACAGCAGATTGGAAAGGA
AGCTGTAGTGAAAATAATTGATGATGCTTACAGAAAAATGCACATAACAGATGCATCAGATTTAGCAGTGGGGGCTCCAAGTGGCTTTCATACTATGAGT
GTTAAAGAAGAAGTTGAAGATTTCATTAGTCCAGAGAAGAGGATTCGTTGTCCTTGTGGAAGTTCACTGCCTACCGAGTTCATGATACAGTGTATAGATT
CAAAATGTCAAGTGCAACAACATATTAGTTGCGTCATTTTTCTGGAGAACCCTGTGGAGAGTGACCATCCAATTCCACCTGTATTTTACTGTGAAACATG
CCGTATTGACCGAGCAGATCCTTTTTGGGTTACTGTGGCGCATCTATCATTGCCTGTGAAGTTAACGAGTTCAAATATTTCAATGGACGGTAATATCACA
TCGCAGAAAGTGGAAACAACTTTTCAATTGACAAGATCAGATCAACACCTACTACAGAATTGTGAATATGATGTTCAGGCCTGGTGCATGCTTCTCAATG
ATAATGTTTTGTTTAGGATGCAGTGGCCACTTTTTGCAAATTTACAGGTTAATGATATGTCCGTGAGAATGCTAGATAGACTGGTATCACAGTCTCTTGG
TGCTAATGGCCGTGATGATGGTGCACAAATCAAATTATGCATTCGAGAGGGAATAAATAGAATTTCTTTATCAGGATGTGATTCTCGTGTTTTCTGCTTC
GGCATCAGACTCGTAAAGCGACGAACTGTTGAACAGGTTCTCAACCTGATTCCCAAAGTTGGTGAGTCTTTTGAAGATGCTCTTGCTCGTGTTTGTCGTT
GCATTGGTGGTGGGATGAGTACTACAAACGAAGATAGTGATAGTGATTTGGAGGTGATTGCAGAGGCGATTACAGTTAATCTTCGCTGTCCTATGAGTGG
CTCTAGAATGAAGATTGCTGGCAGATTTAAACCTTGTGCTCACATGGGCTGTTTTGATCTTGAAACTTTTGTGAAACTAAATCAACGCTCCCGCAAGTGG
CAGTGTCCTATTTGTCTTAAGAATTACTGCTTGGAGGATATTGTCATTGATCCTTACTTCAACCGCATTACAACTTTGATGGGTCATTGTGAAGAAGACA
TAACTGAGATTGAGGTGAAACCTGATGGTTCTTGGACTGTAAAGACCAAAGTTGACATAGGTGATCTCAGGCAATGGCATTTTCCTGATGGTTCTCTTTG
TGCTCTTACTGATGAAGTTACTTCCTGTTACAAAATCCCGAGGCAGATCGAGAAGGGAGATGGCTTGAAAGCACATTTTAGTCCTGAGACCGGAATTAAG
AATAATCTCAGTGGAATTGTGCAAGGAAGAAACCCTCAGCTTGCCTTTTGTTCCTCAAAGAATCAACTTGAGGGAAGTTTTGTAAATCATGGCCAAAGGA
CACTAACAATGAGTAGTAGCACCACTGGAAGTGGCGGGGATGAAGAGGACCCAAGTATAAACCAAGATTACAGTGGGCATGTTGAAATATCTCCCAGTAG
TGTCAATGAGATCAACTCTATCTGTCATTATTTTGACCCAACACTTGCAATAAACCATGGTAGTTCTGTGGCACCAGGGAATGCTGACATCATTATTCTA
AGTGATTCCGATGAAGAGAATGTCAATTTAGTTCCTCCTGAAACTGTCTATGATACTTACAGAGTAAATGGGAGTGGTTCTTCATTGGCTGTCAATCCTG
GAATAACAGACTCATACTTAGAAGATCTAGCTCTTGATGCAGGTGCAAATTCTTGTTTTGGTCTCTTTGATACAGGTGTCAATGATGTTGGGATGTCTAA
CTGGTCATACTCTTCTTGTACTCAAGCTGGTCCCCATTTCCAATTATTTAATACAGACCCGGATGTATCAGATGCTTTTATTGATCTGGATCATCCTTCC
ATTAGTTGTGCTGTTCCAATGAATGGTTGTACACTGGCATCAACGCCAGCTATAACTTCTGGTGGTGAGGTCCTAGATTCTTTAGCCTGTGACGCCAATG
TTGATATGGATGTTGGCTTGGTTGATAATCCTATGAGATTTGTTGCTGAGGACCCCTCATTACAAACATTTCTCCCAGTTCAACCTGTGCAGCCTGACTT
GGTGCACAAGCCTCCTGTATCAAATCGTGCCCCTACTGAGGATTGGTTTCCCCTTAGCCTCAGCAGCACCAGTGAGAGTTTTGGCAATCACACCAGGAAT
CATGATCAGGGTGCTGCTAAAATTGGGGTTGATTTGAGAAACCAGTTAGGATCAAATCAAGCTACTTCAGTTGCAGCTCTAAACGATGAAGCTAGGTCTA
ACAGGAAATGTAACAAGAAATTTTCAGATGGCCCTTTCTCATTTCCTCGCCAGCCGCGATCTGTGAGACAACGTGTTTATTCTCAATAG
AA sequence
>Potri.010G219600.6 pacid=42799361 polypeptide=Potri.010G219600.6.p locus=Potri.010G219600 ID=Potri.010G219600.6.v4.1 annot-version=v4.1
MEMNLVASCKGKLAYFRIKELKDILSLLGLSKQGKKQDLMDRVLGLLSDDEICSARSFVRKQQIGKEAVVKIIDDAYRKMHITDASDLAVGAPSGFHTMS
VKEEVEDFISPEKRIRCPCGSSLPTEFMIQCIDSKCQVQQHISCVIFLENPVESDHPIPPVFYCETCRIDRADPFWVTVAHLSLPVKLTSSNISMDGNIT
SQKVETTFQLTRSDQHLLQNCEYDVQAWCMLLNDNVLFRMQWPLFANLQVNDMSVRMLDRLVSQSLGANGRDDGAQIKLCIREGINRISLSGCDSRVFCF
GIRLVKRRTVEQVLNLIPKVGESFEDALARVCRCIGGGMSTTNEDSDSDLEVIAEAITVNLRCPMSGSRMKIAGRFKPCAHMGCFDLETFVKLNQRSRKW
QCPICLKNYCLEDIVIDPYFNRITTLMGHCEEDITEIEVKPDGSWTVKTKVDIGDLRQWHFPDGSLCALTDEVTSCYKIPRQIEKGDGLKAHFSPETGIK
NNLSGIVQGRNPQLAFCSSKNQLEGSFVNHGQRTLTMSSSTTGSGGDEEDPSINQDYSGHVEISPSSVNEINSICHYFDPTLAINHGSSVAPGNADIIIL
SDSDEENVNLVPPETVYDTYRVNGSGSSLAVNPGITDSYLEDLALDAGANSCFGLFDTGVNDVGMSNWSYSSCTQAGPHFQLFNTDPDVSDAFIDLDHPS
ISCAVPMNGCTLASTPAITSGGEVLDSLACDANVDMDVGLVDNPMRFVAEDPSLQTFLPVQPVQPDLVHKPPVSNRAPTEDWFPLSLSSTSESFGNHTRN
HDQGAAKIGVDLRNQLGSNQATSVAALNDEARSNRKCNKKFSDGPFSFPRQPRSVRQRVYSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G60410 ATSIZ1, SIZ1 DNA-binding protein with MIZ/S... Potri.010G219600
[exp]
0 1
AT3G06670 binding (.1.2) Potri.010G142200
[exp]
3.00 0.8965
AT5G47010 ATUPF1, UPF1, L... LOW-LEVEL BETA-AMYLASE 1, RNA ... Potri.003G086400
[exp]
3.46 0.9028
AT5G22030 UBP8 ubiquitin-specific protease 8 ... Potri.006G201100
[exp]
3.60 0.8724
AT4G15090 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, F... Potri.003G110300
[exp]
4.35 0.8664
AT4G16310 LDL3 LSD1-like 3 (.1) Potri.005G235400
[exp]
4.35 0.9036
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Potri.010G178600
[exp]
5.29 0.8930
AT1G21610 wound-responsive family protei... Potri.005G182300
[exp]
6.00 0.8862
AT2G39340 AtSAC3A yeast Sac3 homolog A, SAC3/GAN... Potri.008G047700
[exp]
6.92 0.8726
AT5G15540 EMB2773, ATSCC2 EMBRYO DEFECTIVE 2773, ARABIDO... Potri.017G092600
[exp]
7.00 0.8848
AT5G63320 NPX1 nuclear protein X1 (.1.2.3) Potri.012G094300
[exp]
8.06 0.8916

Potri.010G219600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.