Plant FIBer expression Database

Potri.010G219800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52270 295 / 1e-100 Transcription initiation factor IIF, beta subunit (.1)
AT1G75510 262 / 1e-87 Transcription initiation factor IIF, beta subunit (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G028900
[exp]
311 / 7e-107 AT1G75510 346 / 5e-121 Transcription initiation factor IIF, beta subunit (.1)
Potri.005G233800
[exp]
307 / 2e-105 AT1G75510 354 / 3e-124 Transcription initiation factor IIF, beta subunit (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040084
[exp]
366 / 2e-128 AT3G52270 322 / 3e-111 Transcription initiation factor IIF, beta subunit (.1)
Lus10023502
[exp]
346 / 3e-119 AT3G52270 294 / 4e-99 Transcription initiation factor IIF, beta subunit (.1)
Lus10030963
[exp]
338 / 6e-118 AT3G52270 303 / 1e-104 Transcription initiation factor IIF, beta subunit (.1)
Lus10033190
[exp]
291 / 1e-98 AT1G75510 352 / 4e-123 Transcription initiation factor IIF, beta subunit (.1)
Lus10010631
[exp]
288 / 2e-97 AT1G75510 350 / 2e-122 Transcription initiation factor IIF, beta subunit (.1)
Lus10040384
[exp]
255 / 6e-85 AT3G52270 226 / 9e-74 Transcription initiation factor IIF, beta subunit (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF02270 TFIIF_beta TFIIF, beta subunit HTH domain
Representative CDS sequence
>Potri.010G219800.1 pacid=42796843 polypeptide=Potri.010G219800.1.p locus=Potri.010G219800 ID=Potri.010G219800.1.v4.1 annot-version=v4.1
ATGGACGATGAGGCAAGCAACAGCAGCAGCGGCAACAACAACAACAACAACAAAAACCTTACAAATGACAATAATAACAAAAGTCCTGTTCTTGGTGGGT
TCTTGGATGCAAGCAAAGCAGAGAAATCAGTTTGGTTGATGAAATGTCCTTCAATAGTCTCTCGTTTTCTACGAAGCCAAGAACATGAAGTTGGTGATGG
TGATGCCTCTTCGCCACCTGTGGCTAAAGTCATTGTCTCTGTTGACCCTCTTAAAAGCAATGATGATGATAATTCTGCTACAGAGTTCACTATGGAAATG
GCTGGCACTGGACCTGGAGATGGACTCAAGTCTTACTCTATGGAAATGTCTAAAGACTTAGTTGATATGTCTGTGTTTTCTGAGTCATCTCAAGGAAAGC
TGTCTGTGGAGGGAAGAATACTGAACAAATTTGATGTGAGGCCTCATAGTGAAAACCTTGAGAACTATAGAAAAATCTGTCGTGAAAGAACAAAAAAGTA
CATGGTCAAGAGTAGACAAATAAAGGTCATCGACAATGACACTGGGAGTCATATGATGCCTATGCCGGGGATGATTATATCTGGACTCGCTGATAAGAAG
AAACTGCCAATCAAGGCATCAGATATGAAAAGGACGAGAAGAGACCGTAGAGAAATGGAAGGGATTATGTTTAAGCTTTTTGAAAAGCAACCAAACTGGA
CACTAAAACAGCTGGTCCAAGAGACAGACCAACCTGAACAATTTGTTAAAGACATGCTTAAAGACCTTTGTGTCTATAACAACAAGGGAAGTAATCAAGG
ATCATATGAGCTGAAGCCGGAATACAAGAAATCAAACGAGGAACCAGCGCCTGAATAG
AA sequence
>Potri.010G219800.1 pacid=42796843 polypeptide=Potri.010G219800.1.p locus=Potri.010G219800 ID=Potri.010G219800.1.v4.1 annot-version=v4.1
MDDEASNSSSGNNNNNNKNLTNDNNNKSPVLGGFLDASKAEKSVWLMKCPSIVSRFLRSQEHEVGDGDASSPPVAKVIVSVDPLKSNDDDNSATEFTMEM
AGTGPGDGLKSYSMEMSKDLVDMSVFSESSQGKLSVEGRILNKFDVRPHSENLENYRKICRERTKKYMVKSRQIKVIDNDTGSHMMPMPGMIISGLADKK
KLPIKASDMKRTRRDRREMEGIMFKLFEKQPNWTLKQLVQETDQPEQFVKDMLKDLCVYNNKGSNQGSYELKPEYKKSNEEPAPE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52270 Transcription initiation facto... Potri.010G219800
[exp]
0 1
AT3G47620 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea ... Potri.004G046300
[exp]
2.23 0.8505
AT2G16070 PDV2 plastid division2 (.1.2) Potri.009G111000
[exp]
14.96 0.8261
AT3G52750 FTSZ2-2 Tubulin/FtsZ family protein (.... Potri.006G083100
[exp]
30.00 0.7679
AT3G63420 AGG1, ATAGG1 Ggamma-subunit 1 (.1.2) Potri.005G179600
[exp]
35.09 0.8153
AT5G18260 RING/U-box superfamily protein... Potri.013G060900
[exp]
40.75 0.8181
AT3G22960 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, ... Potri.010G080700
[exp]
74.17 0.7588
AT2G37000 TCP TCP11 TCP family transcription facto... Potri.016G094800
[exp]
75.15 0.8045
AT3G46020 RNA-binding (RRM/RBD/RNP motif... Potri.001G236200
[exp]
96.12 0.7810
AT3G62130 LCD L-cysteine desulfhydrase, Pyri... Potri.014G112700
[exp]
121.65 0.7864
AT5G40570 Surfeit locus protein 2 (SURF2... Potri.001G342400
[exp]
129.74 0.7834

Potri.010G219800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.