Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25030 355 / 5e-122 unknown protein AT5G45410 298 / 9e-100 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G042100 [exp] 493 / 4e-176 AT4G25030 355 / 1e-121 unknown protein Potri.001G131300 [exp] 307 / 4e-103 AT5G45410 337 / 9e-115 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041414 [exp] 410 / 2e-143 AT4G25030 424 / 4e-149 unknown protein Lus10036514 [exp] 407 / 3e-142 AT4G25030 420 / 1e-147 unknown protein Lus10036513 [exp] 400 / 1e-139 AT4G25030 413 / 8e-145 unknown protein Lus10041415 [exp] 396 / 4e-138 AT4G25030 408 / 5e-143 unknown protein Lus10033276 [exp] 300 / 3e-100 AT4G25030 348 / 4e-119 unknown protein Lus10034730 [exp] 293 / 6e-98 AT4G25030 336 / 6e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G219900.1 pacid=42799011 polypeptide=Potri.010G219900.1.p locus=Potri.010G219900 ID=Potri.010G219900.1.v4.1 annot-version=v4.1 ATGGACTTTTTCTTCAGAGGTCTAAGTGAGGATCCCGCACCTTCTCAGCTAGACATCCATAGGTGTCCCTTTCTGAGAAACATTAATGAGCCCACTAGTT TTTCCCTTTCCTCATCCATGCCTTTCCCAATGCCTGTGCGCATGGGTAAGGGTCCAATTTTTGAAGATGGTCCCAATTTTGACATGGCTTTTAGGCTATT CCATGGACATGATGGAGTAGTCCCACTTTCTGAAAGATCTTTATCAAATGCTGAGAAAGTAGAACCTCAACTCGCTGTACCCAAATTCAATCCTTTAGCT GCAAAGGCAGCCACCATCAGTCTTTCATCCTTTGGAGCTGGGGGACCCTTCAGTTTTGATGCGTTTTCTAAGAAGTGGAATAATCAGAAGAAAAACTCCA ATTCATCCAAGAAAGGGTCGTCTTCACAGGGAGGACAATCTAATCATGAGGCATTGAGCAATGAGTGGCTGCAAACTGGAAACTGCCCTATTGCGAAATC TTATCGGGCAGTTAGCAGTGTCTTGCCACTTGTAGCTAAGGTTCTGAAACCCCCTCCAGGCATGAACATCAAGTGCCCACCTGCAGTGATTGCAGCCAGA GCAGCTATATCACGAACTTCCTTTGCAAAGAATCTCCGGCCACAACCCTTGCCCGCAAAAATACTTGTGATTGGGATTTTGGGTATGGCAGCAAATGTTC CTTTAGGAATATGGAGGGAACACACCAAAAAATTTTCGCCATCTTGGTTTGCTGCTGTCCATGCTGCAGTTCCATTCATAGCCATGCTTAGGAAATCCAT ATTGATGCCAAAGTCAGCCATGGCACTTACCATTGGAGCATCTATATTAGGACAGGTTATTGGATCTAGGGCAGAGCGATACCGGCTGAAGGCAGTAGCT GCCAAGAGAATGCCTCTTGCCGAAACACCTGCCAGTAGCTCCAGTCAGTTGCAAGTTGTTGCTGTTAAGAGTGGACATTGCGGCGCTCTAGTGGAATATC CAGTTTCCCTTCAGATGGCAGGGAATTCCTCTTCAGCAGCAGATGTGTTCTGTTAA
AA sequence Show only first row Show all	>Potri.010G219900.1 pacid=42799011 polypeptide=Potri.010G219900.1.p locus=Potri.010G219900 ID=Potri.010G219900.1.v4.1 annot-version=v4.1 MDFFFRGLSEDPAPSQLDIHRCPFLRNINEPTSFSLSSSMPFPMPVRMGKGPIFEDGPNFDMAFRLFHGHDGVVPLSERSLSNAEKVEPQLAVPKFNPLA AKAATISLSSFGAGGPFSFDAFSKKWNNQKKNSNSSKKGSSSQGGQSNHEALSNEWLQTGNCPIAKSYRAVSSVLPLVAKVLKPPPGMNIKCPPAVIAAR AAISRTSFAKNLRPQPLPAKILVIGILGMAANVPLGIWREHTKKFSPSWFAAVHAAVPFIAMLRKSILMPKSAMALTIGASILGQVIGSRAERYRLKAVA AKRMPLAETPASSSSQLQVVAVKSGHCGALVEYPVSLQMAGNSSSAADVFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25030			unknown protein		Potri.010G219900 [exp]	0	1
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.007G047800 [exp]	1.41	0.8100
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	3.87	0.8151
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.015G023300 [exp]	10.39	0.7335	Pt-UBC.4
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.001G383500 [exp]	14.28	0.8083
AT3G20920			translocation protein-related ...		Potri.009G052800 [exp]	16.73	0.6957
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	19.79	0.6840
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Potri.010G025300 [exp]	21.33	0.7500
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	22.27	0.7047	ATFYPP3.2
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Potri.006G147500 [exp]	23.36	0.6693	Pt-NMT1.6
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.015G078000 [exp]	32.24	0.7362

Compare expression of checked genes

Potri.010G219900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.