Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07990 734 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G35780 685 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT4G30810 536 / 0 SCPL29 serine carboxypeptidase-like 29 (.1) AT4G30610 535 / 0 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 512 / 3e-180 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G02110 511 / 1e-179 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G35770 501 / 4e-176 SCPL28 serine carboxypeptidase-like 28 (.1) AT2G24010 483 / 3e-169 SCPL23 serine carboxypeptidase-like 23 (.1) AT5G23210 454 / 7e-157 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G63470 447 / 3e-154 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G041800 [exp] 883 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220200 [exp] 626 / 0 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 623 / 0 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.018G103100 [exp] 559 / 0 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.018G105700 [exp] 554 / 0 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.006G183200 [exp] 548 / 0 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 519 / 0 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 518 / 0 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.005G091700 [exp] 467 / 4e-162 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023505 [exp] 777 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 769 / 0 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 583 / 0 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10015489 [exp] 531 / 0 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 531 / 0 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 520 / 0 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10010190 [exp] 440 / 2e-151 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 434 / 2e-149 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10037810 [exp] 405 / 4e-138 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10010191 [exp] 404 / 1e-137 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.010G220100.1 pacid=42798523 polypeptide=Potri.010G220100.1.p locus=Potri.010G220100 ID=Potri.010G220100.1.v4.1 annot-version=v4.1 ATGGGTCATTCTTTGCTCTCTATTCTCTGCCTTTTAGTCTCTCTTTTTGTCTATTCCTGTATATGCGCTCCTCTTGAAGATCAAGGAAGAGACAAGATCA CATATTTGCCAGGGCAGCCAGGGAGTGTAGAGTTCAATCAGTACTCAGGTTATGTGACTGTGAACCAACAATCCGGGAGGGCATTGTTTTACTGGTTGGT CGAGGCACCGACAAGTCGCAGACCTGAGTCCAGACCACTTGTTTTATGGCTCAATGGAGGCCCTGGTTGCTCCTCTGTTGCTTATGGAGCAGCTGAGGAG ATTGGGCCTTTTCGCATTAGACCTGATGGCAAAACTCTTTACTCCAATCCTTATGCTTGGAATAAGTTGGCGAATTTGCTGTTCCTGGAATCTCCAGCTG GGGTTGGTTTTTCATATTCAAATACGTCTTCGGATTTGTACACGGCTGGTGACCAGAGAACTGCTGAAGACGCATACACATTTCTAGTCAATTGGTTTGA AAGGTTTCCGCAGTACAAATATAGAGATTTCTACATCGCCGGAGAAAGCTACGCAGGTCACTATGTACCACAGTTGTCCCAAATTGTTTATCAGAAGAAC AAGGGAATTAAGAATCCTGTAATTAACTTCAAGGGATTTTTGGTGGGAAATGCAGTCACTGATGATTATCATGATTATGTTGGCACCTTTGAGTACTGGT GGACCCATGGTTTAATTTCTGATTCTACCTATCGAACTCTACGCCTCACCTGTGATTTTGTATCATCTACACACCCATCAGTAGAATGCATGAAGGCTCT CAAGCTTGCAGAGTTGGAGCAAGGGAACATTGATCCATATAGCATTTTCACACAGCCTTGCAATAATACCGCAGCCTTGAGGCACAACCTAAGGGGTCAT TATCCATGGATGTCCAGAGCATATGATCCCTGCACAGAGAGGTATTCTAAAGTGTACTTCAATCGCCCTGAAGTCCAGAAGGCACTCCATGCAAATGTAA CTGGGATTCCTTACCCATGGGAAACATGCAGTAACATTGTAGGAGACTACTGGGCAGATTCTCCACTTTCCATGCTTCCTATATATAAAGAACTCATTGC TGCAGGTCTAAGGATATGGGTCTACAGTGGAGATACTGATGCAGTGGTTCCTGTTACTGCAACTCGATACTCAATTGATGCCCTAAAACTACCAACTATT ATCAATTGGTATCCGTGGTATGACAGTGGAAAGGTTGGCGGGTGGAGCCAAGTATACACAGGGCTAACTTTTGTAACAGTGACCGGAGCAGGGCATGAAG TTCCACTCCATCGCCCTCGACAGGCTTTTATTCTTTTCATGTCATTTTTGGGGAACAAGTCCATGCCGGGCCGAAGCTTTTAG
AA sequence Show only first row Show all	>Potri.010G220100.1 pacid=42798523 polypeptide=Potri.010G220100.1.p locus=Potri.010G220100 ID=Potri.010G220100.1.v4.1 annot-version=v4.1 MGHSLLSILCLLVSLFVYSCICAPLEDQGRDKITYLPGQPGSVEFNQYSGYVTVNQQSGRALFYWLVEAPTSRRPESRPLVLWLNGGPGCSSVAYGAAEE IGPFRIRPDGKTLYSNPYAWNKLANLLFLESPAGVGFSYSNTSSDLYTAGDQRTAEDAYTFLVNWFERFPQYKYRDFYIAGESYAGHYVPQLSQIVYQKN KGIKNPVINFKGFLVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRTLRLTCDFVSSTHPSVECMKALKLAELEQGNIDPYSIFTQPCNNTAALRHNLRGH YPWMSRAYDPCTERYSKVYFNRPEVQKALHANVTGIPYPWETCSNIVGDYWADSPLSMLPIYKELIAAGLRIWVYSGDTDAVVPVTATRYSIDALKLPTI INWYPWYDSGKVGGWSQVYTGLTFVTVTGAGHEVPLHRPRQAFILFMSFLGNKSMPGRSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	0	1
AT3G15690			Single hybrid motif superfamil...		Potri.001G172600 [exp]	2.00	0.8173
AT1G12460			Leucine-rich repeat protein ki...		Potri.003G117500 [exp]	2.82	0.8026
AT3G48610		NPC6	non-specific phospholipase C6 ...		Potri.015G097900 [exp]	3.74	0.7844
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	3.87	0.8291
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	7.41	0.8136
AT2G23690			unknown protein		Potri.005G130200 [exp]	7.74	0.7511
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145548 [exp]	10.39	0.7443
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	11.83	0.7993	FAH1.2
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Potri.018G066300 [exp]	12.40	0.7631	SMH903
AT2G26110			Protein of unknown function (D...		Potri.018G053000 [exp]	14.73	0.8068

Compare expression of checked genes

Potri.010G220100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.