Plant FIBer expression Database

Potri.010G220800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G220800.1 pacid=42800297 polypeptide=Potri.010G220800.1.p locus=Potri.010G220800 ID=Potri.010G220800.1.v4.1 annot-version=v4.1
ATGATTTTAATTAAAGAACCCATGGAAGTACATATAAGAAGAGCTGAGGCAAAGGGCTCCGGCTGTTTTCAAAGGCTCTACTTAGGAAACCTTAAACCTC
ATAGAAATGCTAAGAGATTTAGTGACTCTATAGACAGGGTGCATAAAGTTTATGCATGCTTCAAGACTGAAGATTGTTTGGCAAAACAGAAATGCTTTAA
GGAATGTGGAGAGAGAGAGAGATCCTCTGGAGACCAGTTCCTTGCTCACCTGTACCTGATAATAAATCAAAAACAGATATATAAAGCATCAATTAACCTG
CATTCGCTGGCCACCTATACCTATAGGAGGGTGGAGAAACCCAGAGCAGGGCAAAAACATTATCATTCTTTTGATGATTAA
AA sequence
>Potri.010G220800.1 pacid=42800297 polypeptide=Potri.010G220800.1.p locus=Potri.010G220800 ID=Potri.010G220800.1.v4.1 annot-version=v4.1
MILIKEPMEVHIRRAEAKGSGCFQRLYLGNLKPHRNAKRFSDSIDRVHKVYACFKTEDCLAKQKCFKECGERERSSGDQFLAHLYLIINQKQIYKASINL
HSLATYTYRRVEKPRAGQKHYHSFDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G220800
[exp]
0 1
AT5G56890 Protein kinase superfamily pro... Potri.018G068100
[exp]
4.24 0.7648
AT5G53460 GLT1 NADH-dependent glutamate synth... Potri.015G017500
[exp]
5.91 0.7451 GLT1.2
AT1G71010 FAB1C FORMS APLOID AND BINUCLEATE CE... Potri.010G113700
[exp]
7.07 0.7241
AT1G03060 SPI SPIRRIG, Beige/BEACH domain ;W... Potri.005G215400
[exp]
7.14 0.7622
AT5G24320 Transducin/WD40 repeat-like su... Potri.001G086600
[exp]
9.74 0.7035
AT5G36930 Disease resistance protein (TI... Potri.008G030002
[exp]
10.90 0.7067
AT4G32010 B3 HSL1, HSI2-L1, ... VP1/ABI3-LIKE 2, HSI2-like 1 (... Potri.006G108300
[exp]
11.61 0.7545
AT5G04560 DME1, DME DEMETER, HhH-GPD base excision... Potri.010G234400
[exp]
12.00 0.6782
AT3G45630 RNA binding (RRM/RBD/RNP motif... Potri.009G026200
[exp]
14.42 0.7197
AT2G32970 unknown protein Potri.002G224900
[exp]
27.82 0.7036

Potri.010G220800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.