Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07950 352 / 5e-122 rhomboid protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G041100 [exp] 472 / 2e-169 AT3G07950 350 / 2e-121 rhomboid protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041408 [exp] 423 / 4e-150 AT3G07950 425 / 6e-151 rhomboid protein-related (.1) Lus10036521 [exp] 422 / 1e-149 AT3G07950 428 / 4e-152 rhomboid protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.010G220900.1 pacid=42799993 polypeptide=Potri.010G220900.1.p locus=Potri.010G220900 ID=Potri.010G220900.1.v4.1 annot-version=v4.1 ATGAGCTCTCCACCCATTCTCGGAGGCGCGAGCTTGTTTACAGGGTTCACGAAGCTATGCAAAGGTCTCGCGGTGGTTCTCGTCGCTGGTCACATTGTTG TTCAGATTTTCCCCTCCGCTGTTAACTATCTTGCTCTTATTCCTGCCAGGACGATTCCTTTTGCATGGAACCTCTTAACAGCTGGTTACATCGAACAATC GATATATGGAGTGGTTGCAAGCACTTTATGCCTCCTCATCATGGGAAAGCTTCTTGAGCCAGTATGGGGTTCTAAGGAGTTCTTAAAGTTCATTTTCATA GTCAACTTTCTTACCTCTGTCTGTGTTTTCATTACTGCGATTAGCCTGTACTACATAACAAGGCAGGAAAATTACCTTTATATGCCCATTTCTGGCTTCC AAGGGATCCTGGCAGGTTTCTTGGTTGGTACCAAGCAAATTATACCTGACCAAGAGCTGTCTCTATTAAGATTAAAGGCAAAGTGGTTTCCGTCTCTTAT GCTCTTGATAGCTATTGTTATAAGCTTCTTTACTGCAGAGTCAGCAAAATATCTTCCAACCATAATATTTGGCACTTATATGAGCTGGATTTACTTGAGA TACTTTCATAGGAAACCAGAAACAAAACTAAGGGGTGATCCAAGTGATGATTTTGCATTCTCATCCTTCTTCCCTGAATTCCTCAGGCCAGTCATTGATC CTATTGCATCAATATTCCATCGGATGCTTTGTGGTAGATTCGAAACGTCTACTGAAGCCCACGGTCACACCTTGGGAGGTGCTCCATTGCCTGGTTCTGA TCCCATCGAGGCATCTAGGAGGAGAGAAAGAGGAGCTAGAGCACTGGAAGAGAGATTGGCAGCTGAGAGGTTGGCCACTGCACGGAGTGCTGAAGAGTTG AAAAAGGATGTCTCAGAGAATGTTTGA
AA sequence Show only first row Show all	>Potri.010G220900.1 pacid=42799993 polypeptide=Potri.010G220900.1.p locus=Potri.010G220900 ID=Potri.010G220900.1.v4.1 annot-version=v4.1 MSSPPILGGASLFTGFTKLCKGLAVVLVAGHIVVQIFPSAVNYLALIPARTIPFAWNLLTAGYIEQSIYGVVASTLCLLIMGKLLEPVWGSKEFLKFIFI VNFLTSVCVFITAISLYYITRQENYLYMPISGFQGILAGFLVGTKQIIPDQELSLLRLKAKWFPSLMLLIAIVISFFTAESAKYLPTIIFGTYMSWIYLR YFHRKPETKLRGDPSDDFAFSSFFPEFLRPVIDPIASIFHRMLCGRFETSTEAHGHTLGGAPLPGSDPIEASRRRERGARALEERLAAERLATARSAEEL KKDVSENV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07950			rhomboid protein-related (.1)		Potri.010G220900 [exp]	0	1
AT2G32580			Protein of unknown function (D...		Potri.014G155600 [exp]	1.73	0.9532
AT3G23610		DSPTP1	dual specificity protein phosp...		Potri.010G033000 [exp]	3.46	0.9485
AT2G33990		IQD9	IQ-domain 9 (.1)		Potri.004G053000 [exp]	3.46	0.9376
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	4.00	0.9396
AT4G15830			ARM repeat superfamily protein...		Potri.010G014200 [exp]	4.00	0.9508
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037500 [exp]	4.47	0.9465
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124200 [exp]	4.79	0.9300
AT1G32050			SCAMP family protein (.1)		Potri.001G134100 [exp]	4.89	0.9298
AT3G22290			Endoplasmic reticulum vesicle ...		Potri.006G023900 [exp]	6.92	0.9344
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.005G010400 [exp]	7.14	0.9504

Compare expression of checked genes

Potri.010G220900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.