Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39190 965 / 0 ATATH8 Protein kinase superfamily protein (.1.2) AT5G24970 300 / 1e-89 Protein kinase superfamily protein (.1.2) AT1G79600 283 / 7e-84 Protein kinase superfamily protein (.1) AT4G31390 280 / 5e-83 Protein kinase superfamily protein (.1.2) AT1G71810 274 / 6e-81 Protein kinase superfamily protein (.1) AT3G24190 267 / 2e-77 Protein kinase superfamily protein (.1) AT5G64940 218 / 5e-60 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 201 / 2e-54 Protein kinase superfamily protein (.1.2.3) AT5G05200 134 / 1e-32 Protein kinase superfamily protein (.1) AT4G24810 115 / 8e-27 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G014000 [exp] 283 / 5e-84 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G275600 [exp] 282 / 6e-84 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G000100 [exp] 274 / 1e-80 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 271 / 1e-78 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 268 / 3e-78 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 225 / 1e-62 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 218 / 6e-60 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 194 / 4e-52 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G061300 [exp] 134 / 6e-33 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036522 [exp] 1127 / 0 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 1080 / 0 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023508 [exp] 571 / 0 AT2G39190 487 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10040390 [exp] 377 / 3e-122 AT2G39190 322 / 1e-101 Protein kinase superfamily protein (.1.2) Lus10020103 [exp] 274 / 1e-80 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 273 / 8e-80 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020152 [exp] 267 / 5e-78 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017924 [exp] 259 / 5e-75 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10032616 [exp] 241 / 2e-66 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 241 / 4e-66 AT3G23940 1148 / 0.0 dehydratase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01636 [poplar] [flax] APH Phosphotransferase enzyme family
Representative CDS sequence Show only first row Show all	>Potri.010G221000.1 pacid=42797933 polypeptide=Potri.010G221000.1.p locus=Potri.010G221000 ID=Potri.010G221000.1.v4.1 annot-version=v4.1 ATGGCGATTGTGACCGTTGCGGCGTCGTCGCCGATGCCTACTCGCGCTCTATTTAGAGAATCCAAAACGGCGACGACGAAAAAGATTTTGAAACGGCAAG GAGTTCGTGTTGTAGGAAATTTCAGTCACTTTGGAGATACGGTGGGCAAGGATTTCGAGTTTATCAAAAAAGGAATTAATAAAGGAATGGACTGGGCAAA TGAAGCATTTCGAATTCCGCAAGTTTCCAAAACTCTAGACGACATTTTATGGCTTCGAAATCTTGAAGATCATAATTCTCCTCCAATTGAACCTCAATCC TGGCCTCAACCTTCATATCCAGGACTTACCGGTGTGGATTTGCTGTTGGCTGATCTTAAAGCATTGGAATCATATGCTAGTTATTTTTATTGTTTGTCTA AGATTTGGTCTAAGCCATTACCTGAAGCCTATGATCCTCAAGAAGTTGCTGATTACTTCAATTGTAGGCCTCATCTTGTCGCTTTTCGACTTCTCGAGGT GTTTACTGCATTTGCTACCGCAACCATAAGAATTCGAGCCTCAGGGATGAGAAAGTTTTTAAGATCAGGTTCCGATGAGGATGTAAATGGGAACATTTCA CAGTACGATTTGGGGATGGTATTAAAAGAAACAATGCTAAATTTGGGTCCCACTTTTATCAAAGTTGGTCAGTCTCTTTCCACAAGGCCAGATATTATTG GTACTGAAATTACCAAGGCACTTTCTGGACTGCATGATCAAATACCTCCTTTTCCCAGGACCTTGGCTATGAAAATCTTTGAGGAAGAATTGGGTTCTCC TGTTGAATCATTCTTTAGCTATGTATCCGAGGAACCTGTGGCTGCAGCATCATTTGGTCAGGTATATCGTGGAAGCACCCTTGATGGTCGTACCGTTGCT CTGAAGGTTCAGCGTCCTAATCTACATCATGTTGTAGTTCGTGATATCTATATAATTCGGCTTGGGCTGGGCCTGTTGCAAAAGATAGCAAAGAGAAAAA GTGACCTTCGCCTCTATGCTGATGAGCTTGGGAAAGGCTTAGTTGGGGAGCTGGATTATTCTATAGAGGCTGCCAATGCCTCCAAGTTTCTGGATGCTCA TTCCTCATTCTCATTCATATATGCTCCAAAAATATTTCCAGATTTAAGCCGAAAGAGAGTTCTGACAATGGAGTGGGTTGTTGGTGAGCGTCCAACTGAT TTACTATCTCTATCTACTAGTTCCGCATATTCAGAAAGACAGAAACTTGAAGCAAAAAGGCGTCTCCTTGATTTGGTTAGCAAAGGAGTAGAAGCATCAT TAGTTCAACTCCTGGAAACAGGCTTATTGCATGGTGATCCACATCCAGGAAACTTGCGTTACATATCATCAGGACAAATAGGTTTCCTGGATTTTGGATT ACTTTGCCAGATGGAAAAGAAGCATCGGTTTGCTATGCTTGCTGCCATAGTACACATTGTAAACGGGGATTGGGCATCCCTTGTGCATGCTCTTATTGAC ATGGATGTTGTGAGGCCAGGGACTAGTATCCGGCGTATTACAATGGAACTGGAAAATTCTTTGGGAGAGGTGGAGTTTAAAGATGGAATACCTGATGTCA AGTTCAGTAGGGTTCTGGGAAAAATATTGTCTGTAGCGATCAAAAATCATTTCCGCATGCCACCATACTTTACTCTTGTGCTCCGTTCTCTTGCATCCCT GGAAGGTTTGGCAGTAGCCGCAGATCCAAACTTTAAGACATTTGAAGCTGCATACCCATATGTTGTTCGGAAACTTCTCACTGAAAATTCTGCTGAAACG AGGAAAATTTTGCATCTGGTGGTTTTGAACAAGCAGAAAGAATTCCGGTGGGAGAGGCTTGCTCTTTTCCTAAGAGTAGGATCCACCAGGAAAGCCTTCA ATCGGGTGATAGCATCAAAGAATGAAAGTTCGCTCGATTATTTACCAAAAAGGGCCAGTGGTGTTTTTGATACTGCACATTTAGTTCTGAGGCTTTTACC ATCTAGAGATGGTATTGTGCTTAGGAAACTTCTAATGACTGCAAATGGAGCTTCATTAATCCGAGCAATGGTTTCCAAGGAGGCAATTTTCGTCAGACAG CAGCTTTGCAGAGTTATTGCTGATGCACTATATCATTGGATGACTCAAACTTTTGGACGAGGCATTATGGCAACCCGGTACGGTTCCCAAGTAAGATTGA CCAGTGAGGCTGACAACAGAGAGCTGAGTACATCTTCCAGGTTAACTGTACCGGTTTATGATTATCAGTCCATAATTAGAGATCGACGCCTCAAAGTGAT CTTTTCCAGGATACTAGATTCTGCAAGGAAAGATCCGGTGTTGATGCTAAAATTCTACTGGACTACATTTGTGATGGTTGTCACAGCCTCAGTTAGGGCT TGTCACCGGGTTTTGGTCTCTCTGTCCGAGGCTACGTTGGCCCCTTCTCGCTTTCTCCCAAGAGTGGCAATTAGTGCATGA
AA sequence Show only first row Show all	>Potri.010G221000.1 pacid=42797933 polypeptide=Potri.010G221000.1.p locus=Potri.010G221000 ID=Potri.010G221000.1.v4.1 annot-version=v4.1 MAIVTVAASSPMPTRALFRESKTATTKKILKRQGVRVVGNFSHFGDTVGKDFEFIKKGINKGMDWANEAFRIPQVSKTLDDILWLRNLEDHNSPPIEPQS WPQPSYPGLTGVDLLLADLKALESYASYFYCLSKIWSKPLPEAYDPQEVADYFNCRPHLVAFRLLEVFTAFATATIRIRASGMRKFLRSGSDEDVNGNIS QYDLGMVLKETMLNLGPTFIKVGQSLSTRPDIIGTEITKALSGLHDQIPPFPRTLAMKIFEEELGSPVESFFSYVSEEPVAAASFGQVYRGSTLDGRTVA LKVQRPNLHHVVVRDIYIIRLGLGLLQKIAKRKSDLRLYADELGKGLVGELDYSIEAANASKFLDAHSSFSFIYAPKIFPDLSRKRVLTMEWVVGERPTD LLSLSTSSAYSERQKLEAKRRLLDLVSKGVEASLVQLLETGLLHGDPHPGNLRYISSGQIGFLDFGLLCQMEKKHRFAMLAAIVHIVNGDWASLVHALID MDVVRPGTSIRRITMELENSLGEVEFKDGIPDVKFSRVLGKILSVAIKNHFRMPPYFTLVLRSLASLEGLAVAADPNFKTFEAAYPYVVRKLLTENSAET RKILHLVVLNKQKEFRWERLALFLRVGSTRKAFNRVIASKNESSLDYLPKRASGVFDTAHLVLRLLPSRDGIVLRKLLMTANGASLIRAMVSKEAIFVRQ QLCRVIADALYHWMTQTFGRGIMATRYGSQVRLTSEADNRELSTSSRLTVPVYDYQSIIRDRRLKVIFSRILDSARKDPVLMLKFYWTTFVMVVTASVRA CHRVLVSLSEATLAPSRFLPRVAISA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	0	1
AT1G73980			Phosphoribulokinase / Uridine ...		Potri.015G055400 [exp]	2.23	0.8867
AT4G01995			unknown protein		Potri.002G194500 [exp]	3.16	0.9146
AT3G54500			unknown protein		Potri.003G200600 [exp]	4.47	0.8515
AT2G46340		SPA1	SUPPRESSOR OF PHYA-105 1, SPA ...		Potri.014G095300 [exp]	5.19	0.9008	SPA1.1
AT3G57710			Protein kinase superfamily pro...		Potri.005G068000 [exp]	5.29	0.8612
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.006G086500 [exp]	5.65	0.8736
AT3G06560		PAPS3	poly(A) polymerase 3 (.1)		Potri.008G102500 [exp]	6.16	0.8531
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	8.77	0.8736
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Potri.004G014100 [exp]	9.27	0.8349
AT1G31410			putrescine-binding periplasmic...		Potri.003G105100 [exp]	10.58	0.8576

Compare expression of checked genes

Potri.010G221000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.