Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39180 899 / 0 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT3G09780 852 / 0 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT3G59420 246 / 6e-70 ACR4 crinkly4 (.1) AT1G70460 208 / 2e-57 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G26940 195 / 5e-55 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT5G47850 201 / 8e-55 CCR4 CRINKLY4 related 4 (.1) AT3G24550 199 / 1e-54 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G58690 192 / 4e-54 Protein kinase superfamily protein (.1) AT3G24790 189 / 1e-53 Protein kinase superfamily protein (.1) AT5G28680 199 / 2e-53 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G089200 [exp] 934 / 0 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.017G029900 [exp] 355 / 1e-109 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 352 / 1e-108 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.018G081300 [exp] 202 / 2e-55 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.019G078300 [exp] 201 / 1e-54 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.017G110400 [exp] 199 / 3e-54 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.009G055200 [exp] 193 / 9e-54 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 197 / 1e-53 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.013G103300 [exp] 197 / 2e-53 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041404 [exp] 1003 / 0 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10036524 [exp] 998 / 0 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10000764 [exp] 360 / 1e-111 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 358 / 8e-111 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10029170 [exp] 201 / 2e-54 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10040663 [exp] 200 / 5e-54 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10011098 [exp] 197 / 7e-54 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10034082 [exp] 198 / 1e-53 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10038595 [exp] 190 / 1e-53 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10003066 [exp] 197 / 2e-53 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G221200.1 pacid=42798973 polypeptide=Potri.010G221200.1.p locus=Potri.010G221200 ID=Potri.010G221200.1.v4.1 annot-version=v4.1 ATGGTAATCCAAAGATGTCTGTCTGGTTCAGTCATTACCATAACCGTTTTTCTGCTTCTACTAGTGTTGCCGGTCAATGTATTGGGGTATGGATCACTTG GTCCAATAGCAGCTGCATTCGGCGAAAATGGGTTCTTTTGTGCTATTGATGCCGGTGGAAAGCAAGAGATCATATGCTGGGACAAAGGTGACAACTTTTC AGTTTCAACATCAACAGCATATTTCAGCTCTCTTCCAGCAATGGCCTCTCTCTCTGGTGGTGAAGAGTTTATTTGTGGAATCACATCTAACAATTCTCAA GCATTTTGCTTTAACTTGTCAAATCCGGGTAATAATCTTGTCCCGAAAAGTTTTCAATACAATTCTTATTCACAAATTGCTTCAGGCAAATATCATGCTT GTGCTATTAAAGGATCTTACTTTTCTAGTGTAGAATATGGAAACGTGGATTGTTGGGAGTTTAATCAGACATCATTTGATTCGTTTCATAATTCTTATAT TGATAGTCTTGTTTTTAGAAGGATTGCTTCTGGTGATGGGTTTAGTTGTGGTGTTATTAAGGAAGGTGGTTTGGTCTGTTGGGGACCCAGATCAGCTAAT TTGGGAGTCTCAGCTGTTTCTGGTGAATTTGAGATTTTAGCCTCAGGAAGGGGTTCTGTTTGTGGTGTTTCTAATGTATCTAGTGAAGTAGAGTGCTGGG GAAATTCTGATGAGCTTGGTTCTCTGCCAGTTGGAACTCGATTTGTAGGTTTATCGGCTGGAGCACGTCACTTTTGTGGGGTTCGCGAGGATAATCATGA AGTTGAGTGTTGGGGGAATTTTGATCTGGCTTCGATTCCAAAAGGTTCGGGGTTTATGGCTATTGCTTCATCAGATTATGCTACTTGTGGGGTTAGAGAA GTTGACTTAGTTCTTGATTGCTGGGGAGTTCATGGGAAGTCCTTGCCAGATTATAGCCCCCCTTTGCAGTTGTGTAGTCCTGGTGTGTGTTGGCCTAGTT CGTGTGGTCATGGAAAGTTTGCATTCAATGCAAGCCTTCTCAATGAGCCAGAATTGACTAATTTATGTGTCAGGAAGGACTTGAAAATTTGCTTGCCTTG TGGGACAAATTGTTCCGAAGGTTATTTCCCTTCTAGTACCTGTAGTGAGAATGCTGATAGAATCTGCACTGCTTGCTCTCTTTGCCAGAACAGCTCCTGC TGGGATGTTTGCGGACTTCATTCTTCGCCAGGGGTTAAGCTGCAGGAGCAAGACATAAAGAAATTAGTTATCATCATTGGCTCATCGGTGTCGGGTTCCA TGCTAATTTTAATAGTCTGGTGTTGCATTCCCCGGATTTTCAAAACGAAAGATGATCAGAATATAAAATACCATCGCAGTTTTTGCATAGGCAAGAAAGT GGTGGAGGCTGAGCCTGACCCCAATCCAGAGCCCCCCCTCTCAATAAGCATGTGTATTGGTGAGACGCAAGTATTCCGGCTTTCAGATTTGAAAGATGCG ACACATGGATTCAAGGAGTTCAGTGAGCTTGGCAGAGGGAGCTTTGGTTTTGTTTACAAGGCTATCCTGACTGATGGAAGGCAAGTAGCTGTCAAGAGGG CTAATGCTGCCACCATAATTCACACGAACAGCCGAGAATTTGAAGCAGAATTAGAAATTTTGTGCACTGTAAGGCATAGTAATATTGTGAACTTGTTGGG TTATTGTGCTGAAATGGGGGAGAGATTACTAGTTTACGAGTATATGCCTCATGGCACACTTCATGACCATCTCCATGGGGAACTCTCTCCTTTAGATTGG AACTTGAGGTTGAAGTTATCTTTGCAGGCTGCAAGAGGACTTGAGTACCTTCACAATGAAGTTGCACCACCCATAGTTCATCGGGATGTGAAGACCTCAA ACATTCTGCTGGACTCTGAGTGGGTGGCAAGAATTGCAGATTTTGGGATGGTAAGTGCTAATGACAGGGATGTAAATGGAGATGTGGAAAGTGATGTATA TAATTTTGGCATTGTTCTGCTGGAGATGTTAACCGGAAGGAAGGCATACGATAGAGATTACGAACCTCCAGGCATTGTTGAGTGGGCATTGCCTTTAATG AGGAGGGGAAGGGCAGCTGCCATTATCGACCGGAATGTACCTCTACCTAGAAATGTGGAACCTCTCCTTAAACTTGCTGATGTAGCCGAGCTTACTTTGA GGGAAAATACCAGTGAGCGTCCCAGCATGTCTAATGTGGCAACTTTGTTGGATCAGATTGTGAAGATTGGATTGATATTCTAA
AA sequence Show only first row Show all	>Potri.010G221200.1 pacid=42798973 polypeptide=Potri.010G221200.1.p locus=Potri.010G221200 ID=Potri.010G221200.1.v4.1 annot-version=v4.1 MVIQRCLSGSVITITVFLLLLVLPVNVLGYGSLGPIAAAFGENGFFCAIDAGGKQEIICWDKGDNFSVSTSTAYFSSLPAMASLSGGEEFICGITSNNSQ AFCFNLSNPGNNLVPKSFQYNSYSQIASGKYHACAIKGSYFSSVEYGNVDCWEFNQTSFDSFHNSYIDSLVFRRIASGDGFSCGVIKEGGLVCWGPRSAN LGVSAVSGEFEILASGRGSVCGVSNVSSEVECWGNSDELGSLPVGTRFVGLSAGARHFCGVREDNHEVECWGNFDLASIPKGSGFMAIASSDYATCGVRE VDLVLDCWGVHGKSLPDYSPPLQLCSPGVCWPSSCGHGKFAFNASLLNEPELTNLCVRKDLKICLPCGTNCSEGYFPSSTCSENADRICTACSLCQNSSC WDVCGLHSSPGVKLQEQDIKKLVIIIGSSVSGSMLILIVWCCIPRIFKTKDDQNIKYHRSFCIGKKVVEAEPDPNPEPPLSISMCIGETQVFRLSDLKDA THGFKEFSELGRGSFGFVYKAILTDGRQVAVKRANAATIIHTNSREFEAELEILCTVRHSNIVNLLGYCAEMGERLLVYEYMPHGTLHDHLHGELSPLDW NLRLKLSLQAARGLEYLHNEVAPPIVHRDVKTSNILLDSEWVARIADFGMVSANDRDVNGDVESDVYNFGIVLLEMLTGRKAYDRDYEPPGIVEWALPLM RRGRAAAIIDRNVPLPRNVEPLLKLADVAELTLRENTSERPSMSNVATLLDQIVKIGLIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Potri.010G221200 [exp]	0	1
AT4G38520			Protein phosphatase 2C family ...		Potri.009G137400 [exp]	2.82	0.7299	Pt-PP2.7
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Potri.015G093400 [exp]	21.21	0.7049
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.006G248200 [exp]	29.13	0.7210	Pt-YUC.2
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.006G214700 [exp]	30.72	0.7121
AT2G28120			Major facilitator superfamily ...		Potri.001G194500 [exp]	31.98	0.6812
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	34.72	0.7181
AT2G47920			Kinase interacting (KIP1-like)...		Potri.014G135000 [exp]	42.82	0.6984
AT2G43990			unknown protein		Potri.007G145400 [exp]	46.76	0.7055
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165800 [exp]	47.62	0.6707
					Potri.016G037200 [exp]	57.96	0.6108

Compare expression of checked genes

Potri.010G221200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.