Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 379 / 2e-130 Protein kinase superfamily protein (.1) AT3G09010 333 / 3e-112 Protein kinase superfamily protein (.1) AT1G53440 315 / 5e-99 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 313 / 2e-98 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56130 313 / 2e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 313 / 3e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 311 / 4e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 313 / 7e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 308 / 1e-96 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 306 / 2e-95 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G040800 [exp] 454 / 4e-161 AT1G16670 289 / 5e-96 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 428 / 3e-150 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 391 / 4e-135 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 390 / 8e-135 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 374 / 3e-128 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 372 / 9e-127 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 347 / 2e-118 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 337 / 3e-114 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 328 / 6e-111 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019933 [exp] 415 / 4e-145 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10026503 [exp] 414 / 9e-145 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10023510 [exp] 411 / 3e-142 AT1G16670 331 / 1e-110 Protein kinase superfamily protein (.1) Lus10040392 [exp] 411 / 3e-142 AT3G09010 323 / 2e-107 Protein kinase superfamily protein (.1) Lus10042460 [exp] 405 / 7e-141 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 404 / 3e-140 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 365 / 4e-125 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 363 / 6e-124 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10011193 [exp] 322 / 3e-108 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10018481 [exp] 323 / 1e-107 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G221400.1 pacid=42798885 polypeptide=Potri.010G221400.1.p locus=Potri.010G221400 ID=Potri.010G221400.1.v4.1 annot-version=v4.1 ATGAGGTTCTCCTTTTCTTGCTCAAAATGCTTCTCTTCTTCATCTGATATGTCCACAGACAGTCCATCAATGCAAGGTTTACAAATTCTTCAAAATGTTC ATGCTTTCTCATTTGATGAATTGAAAGTCGCCACCAATGGATTCCGCTCATCAAATAAAATCGGGGAAGGTGGATTCGGCTCTGTTTACAAGGGAGTACT GCAAGACGGGAGAATCGTTGCCATCAAAATGCTTTCAGCAGAATCAAAGCAAGGACACAGGGAGTTCATGTCTGAAATAGCTTCGGTGTCCAATATTAAC CATGAAAATCTTGTCAACTTGCATGGTGGATGCATTGATGGTCCTTGTAAAATTCTTGTTTATGACTACATGGAAAATGGCAGCCTTGCTCAAACTTTGC TTGGTGGTGAGGAAAATAGAGCTAGATTCGGGTGGGAAACAAGGAGAGGAATTTCGTTAGGCATTGCTCAAGGTCTGGCATATATTCATGAAGAGATCAA GCCTCATATTGTGCATCGAGATATTAAAGCAAGCAACATACTTTTGGACAAGAATCTGTGTCCAAAAGTTTCAGATTTCGGCCTCTCTAAACTATTTCCT GAGAATTTCACCCATGTGAGCACACGAGTTGCTGGCACATTGGGTTATCTAGCTCCGGAGTATGCCATTAGTGGCCGCTTGACTCGGAAAACGGACGTAT ACAGTTTTGGAGTGCTACTTCTTGAAATAGTCAGTGGACGGAAAGCTACTGATTTCGATCCAGAACTTGGAGAGCACTACCTCGTGGAGAAGGCATGGGA GATGTACAAGGCTGACAACCTTCTAAAACTAGTGGATCCGATGCTAGATGGCAACTTCTTAGGAACAGAAGCTGTTGGATTTGTAAAGGTTGCCTTACTT TGTGTACAGGAGAAATGTGGGCTTCGACCGAGCATGTCGAAGGCAATTAAGATGATGAGAGGGGAAATCGACATCCACAACACGCAAATAACACAGCCAG GATTCATCATCGATTTCATGGATGTGAAAATAGGACGAAAACCACAAAGCTCAGTGCGAAGCATCACAGGCAGGCGCAGCCCAAGGCTGTACCCTCTGTG A
AA sequence Show only first row Show all	>Potri.010G221400.1 pacid=42798885 polypeptide=Potri.010G221400.1.p locus=Potri.010G221400 ID=Potri.010G221400.1.v4.1 annot-version=v4.1 MRFSFSCSKCFSSSSDMSTDSPSMQGLQILQNVHAFSFDELKVATNGFRSSNKIGEGGFGSVYKGVLQDGRIVAIKMLSAESKQGHREFMSEIASVSNIN HENLVNLHGGCIDGPCKILVYDYMENGSLAQTLLGGEENRARFGWETRRGISLGIAQGLAYIHEEIKPHIVHRDIKASNILLDKNLCPKVSDFGLSKLFP ENFTHVSTRVAGTLGYLAPEYAISGRLTRKTDVYSFGVLLLEIVSGRKATDFDPELGEHYLVEKAWEMYKADNLLKLVDPMLDGNFLGTEAVGFVKVALL CVQEKCGLRPSMSKAIKMMRGEIDIHNTQITQPGFIIDFMDVKIGRKPQSSVRSITGRRSPRLYPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	3.46	0.7630
AT3G05390			unknown protein		Potri.004G232200 [exp]	4.47	0.7547
AT3G51930			Transducin/WD40 repeat-like su...		Potri.001G022900 [exp]	6.00	0.7826
AT2G33205			Serinc-domain containing serin...		Potri.003G174200 [exp]	8.83	0.7465
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.008G139500 [exp]	9.16	0.7313	Pt-ANN5.2
AT4G23440			Disease resistance protein (TI...		Potri.003G129600 [exp]	10.09	0.7122
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	10.39	0.7386	RHG4.2
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.002G248500 [exp]	12.40	0.7330
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.005G069800 [exp]	13.74	0.7053
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	15.49	0.7382

Compare expression of checked genes

Potri.010G221400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.