Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PABAS
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28880 1016 / 0 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT2G29690 132 / 6e-32 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT5G05730 118 / 2e-27 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT3G55870 117 / 2e-27 ADC synthase superfamily protein (.1) AT1G25220 99 / 1e-22 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT5G57890 97 / 4e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G25155 95 / 8e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 95 / 8e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 95 / 8e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 89 / 2e-19 Glutamine amidotransferase type 1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044300 [exp] 124 / 4e-29 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1) Potri.010G190600 [exp] 120 / 5e-28 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Potri.010G102200 [exp] 104 / 1e-24 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.008G138800 [exp] 102 / 7e-24 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041403 [exp] 1169 / 0 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10036525 [exp] 1107 / 0 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10014842 [exp] 128 / 2e-30 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10016945 [exp] 125 / 1e-29 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1) Lus10014830 [exp] 124 / 5e-29 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10030761 [exp] 104 / 4e-24 AT1G25220 363 / 9e-127 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10009888 [exp] 107 / 8e-24 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10013241 [exp] 100 / 7e-23 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [poplar] [flax] Glutaminase_I PF00117 [poplar] [flax] GATase Glutamine amidotransferase class-I CL0014 [poplar] [flax] PF00425 [poplar] [flax] Chorismate_bind chorismate binding enzyme CL0014 [poplar] [flax] PF04715 [poplar] [flax] Anth_synt_I_N Anthranilate synthase component I, N terminal region
Representative CDS sequence Show only first row Show all	>Potri.010G221500.5 pacid=42797520 polypeptide=Potri.010G221500.5.p locus=Potri.010G221500 ID=Potri.010G221500.5.v4.1 annot-version=v4.1 ATGGCTCTGTGTTCGTCGACTTCGTTGGAACTGAAAAATCCTTTTATTGAGGGCACGAAAGGGAAAATAGCGACATCCAAGTCTTTTCTAAGAGTTGGTT ATGTTGCCAAGAATGAGAAATCTTGTTGCTGTAATGGTAGAAAGGTGGCGGTATCCAGTCATTTGATGCCCGGACATTTAGAAGGGTCGTTCATGGGAAA GAAACGGCTGGAGGAGCCTAGCCAGAAAATGGATTTTGTGAGGACATTGTTGATTGACAACTATGATAGTTATACCTATAATATTTACCAAGAGCTATCT GTCGTTAATGGGGTGCCTCCTGTGGTCATCCAAAATGATGAGTGGACATGGGAGGATGCGTGCCATTACTTGTATGAAAAGAGAGCTTTTGATAATATTG TTATCTCACCTGGACCTGGTTCTCCAACATGCGCAGCGGATATAGGAATATGTCTTCGACTGCTGCTCGAGTGCAGGGACATTCCTATTCTGGGTGTTTG CCTTGGACACCAGGCCTTGGGTTATGTCAATGGTGCCAGAATTGTCCATGCATCTGAACCAGTCCATGGACGCTTAAGTGAAATCGAACATAATGGAAGC AGACTGTTTGATAACATCCCTTCTGGCAGAAAATCTGGTTTTAAGGTGGTACGGTATCATTCTCTCATCATAGATTCAGAAGCACTGCCAAAGGAACTTA TACCGACTGCTTGGACTTCTAGCAGCACTCATTCTTTCCTTGAGTCTCCGAATTCTGGTCTTAACCTTGATGCGTGCAAGAATCAGATTAGGCCAAGCAC ATCTTCTGATACTTTTTCAACAGGATCACACAATGGAGCTTCTTGGTCTTTTAGCCACCCTGGAAGAATGCAAGGGGGAAAAGTTCTCATGGGCATTATG CATTCTACTAGGCCGCACTATGGCTTACAGTTTCATCCAGAAAGTATTGCAACCTGTCACGGAAGGCAAATATTTGAGAATTTTAGAGAGATTACAGAGG ATTATTGGCAGAGACTGAGGCCAAGGTCAACATTTATTAACGAGAGAAATGTTCATTATACTGCATGCATGCAGGTGCATGTTGCTAGTCAGCTGTTTAG AGTTCCTAGAATTGGATCATTAGTACACAAGGAAGATGCTCAACCATTCAAAGAAGCTTTTAGAAGAAGCCAATTACTTGGAAATGCCAACGTGAATTGT CTCAGCATTTCCAGTGCATTGAAGTTTCCAGAATCAAGCATCAACGTTAGGCATTTAAAGTTGAAATGGAGGAAATTTGATAAATTAGCAGCCCGAGTTG GGGGAGCAAGAAACATATTTAACGAACTGTTTGGGGTTTGTAAGGCTGAAAATACGTTTTGGCTGGACAGTTCCTCAGTAGAAAAGAAAAGAGCACGCTT TTCATTTATGGGGGGTAAAGACGGACCACTTTGGAGGCAAATGACATTTAGATTGTCAGATCAAAGTGATATGGATTTTAAAGGTGGAGGTTACTTATCA ATCAAAGATACTCAAGGATCCACCGAAAGCATGTTTTTGGAAAAAGGTTTTCTTGATTTTTTGAACCAGGAGCTACTATCATTTACTTACGATGAAGAAG ATTTTGAAGAACTGCCATTTGACTTTCATGGTGGTTATATTGGTTACTTCGGGTATAGCCTCAAAGTTGAATGTGGCATGTTATCCAACCGTCACAAATC TACGACTCCAGATGCTTGCTTTTTCTTTGCAGATAATTTTGTAGTCATCGATCATCTTAATGACAATGTTTATATATTGTCTTTACATGAGGAAAGCACA ACCAGCATTCCATGGTTGGATGACACGGAAAATAAGTTGCTTTGCTTAGAAGCTTCTACCACAAGGAAATTAGGGGAGCAGGCTTCCCCTACTGCAACAG TTTCCCCATACAAGGCAGGTTTTCTTGGTGAGAAATCTAGAGAGCAGTATATTAAAGATGTTAGTAAGTGTCTAGAATACATTAAAGATGGGGAAAGCTA CGAGTTATGTCTCACTTCTCAGATGAGAAAAACAGTTGGAGAGATAGATTCCTTGGGACTTTACCTTCACCTCAGAGAGAAAAATCCAGCACCATATGCT GCGTGGCTTAATTTTTCAAATGAAGATTTGTGCATCTGCTGTTCTTCTCCTGAGAGATTCCTATGCTTGGACAGAAATGGTATATTAGAAGCAAAGCCGA TTAAAGGTACCATAGCTCGTGGGGTGACCCTGGAGGAAGATGAAGAGCTTAAATTGAAACTGCAGTACAGTGAAAAGGATCAAGCTGAAAATCTTATGAT TGTCGATCTTTTGAGGAACGATCTTGGTCGTGTCTGTGAGCCTGGTTCTGTTCATGTCCCACATCTTATGGAAGTAGAGTCGTATGCAACTGTGCATACT ATGGTGAGTACAATTCGAGGAAAGAAGAGGTCAAATGTAAGTGCAGTTGACTGTGTCAGGGCTGCATTTCCTGGTGGCTCAATGACAGGTGCACCAAAAT TGAGATCAATGGAGCTTCTCGATTCTCTTGAAAGCAGTTCTCGTGGGATCTACTCAGGTTCCATTGGATTTTTCTCATATAATCAGACATTTGATCTGAA TATAGTGATAAGAACAATAGTTATTCATGACGGTGAAGCTTCTATAGGTGCAGGAGGAGCTATTGTTGCTCTATCAAATCCTGAAGACGAATACGATGAA ATGTTACTGAAAACACGAGCACCAGCAAGCGCAGTGATAGAATTTCAGTAG
AA sequence Show only first row Show all	>Potri.010G221500.5 pacid=42797520 polypeptide=Potri.010G221500.5.p locus=Potri.010G221500 ID=Potri.010G221500.5.v4.1 annot-version=v4.1 MALCSSTSLELKNPFIEGTKGKIATSKSFLRVGYVAKNEKSCCCNGRKVAVSSHLMPGHLEGSFMGKKRLEEPSQKMDFVRTLLIDNYDSYTYNIYQELS VVNGVPPVVIQNDEWTWEDACHYLYEKRAFDNIVISPGPGSPTCAADIGICLRLLLECRDIPILGVCLGHQALGYVNGARIVHASEPVHGRLSEIEHNGS RLFDNIPSGRKSGFKVVRYHSLIIDSEALPKELIPTAWTSSSTHSFLESPNSGLNLDACKNQIRPSTSSDTFSTGSHNGASWSFSHPGRMQGGKVLMGIM HSTRPHYGLQFHPESIATCHGRQIFENFREITEDYWQRLRPRSTFINERNVHYTACMQVHVASQLFRVPRIGSLVHKEDAQPFKEAFRRSQLLGNANVNC LSISSALKFPESSINVRHLKLKWRKFDKLAARVGGARNIFNELFGVCKAENTFWLDSSSVEKKRARFSFMGGKDGPLWRQMTFRLSDQSDMDFKGGGYLS IKDTQGSTESMFLEKGFLDFLNQELLSFTYDEEDFEELPFDFHGGYIGYFGYSLKVECGMLSNRHKSTTPDACFFFADNFVVIDHLNDNVYILSLHEEST TSIPWLDDTENKLLCLEASTTRKLGEQASPTATVSPYKAGFLGEKSREQYIKDVSKCLEYIKDGESYELCLTSQMRKTVGEIDSLGLYLHLREKNPAPYA AWLNFSNEDLCICCSSPERFLCLDRNGILEAKPIKGTIARGVTLEEDEELKLKLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPHLMEVESYATVHT MVSTIRGKKRSNVSAVDCVRAAFPGGSMTGAPKLRSMELLDSLESSSRGIYSGSIGFFSYNQTFDLNIVIRTIVIHDGEASIGAGGAIVALSNPEDEYDE MLLKTRAPASAVIEFQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Potri.010G221500 [exp]	0	1	PABAS
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.001G215400 [exp]	2.00	0.7701
AT3G16270			ENTH/VHS family protein (.1)		Potri.001G187000 [exp]	14.42	0.6765
AT4G02740			F-box/RNI-like superfamily pro...		Potri.005G210500 [exp]	17.43	0.6876
AT2G41060			RNA-binding (RRM/RBD/RNP motif...		Potri.005G081600 [exp]	22.97	0.7135
AT1G11390			Protein kinase superfamily pro...		Potri.004G032800 [exp]	23.45	0.6769
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Potri.010G251800 [exp]	23.66	0.7284
AT1G24330			ARM repeat superfamily protein...		Potri.008G177100 [exp]	26.49	0.6967
AT5G05380		PRA1.B3	prenylated RAB acceptor 1.B3 (...		Potri.019G124100 [exp]	27.12	0.6899
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.018G130100 [exp]	36.53	0.7091
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Potri.013G145400 [exp]	39.87	0.5819

Compare expression of checked genes

Potri.010G221500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.