Plant FIBer expression Database

Potri.010G221600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48850 734 / 0 EMB1144 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G040700
[exp]
811 / 0 AT1G48850 672 / 0.0 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037189
[exp]
724 / 0 AT1G48850 738 / 0.0 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
Lus10036738
[exp]
710 / 0 AT1G48850 733 / 0.0 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01264 Chorismate_synt Chorismate synthase
Representative CDS sequence
>Potri.010G221600.4 pacid=42799136 polypeptide=Potri.010G221600.4.p locus=Potri.010G221600 ID=Potri.010G221600.4.v4.1 annot-version=v4.1
ATGGCTTCTTCTACTCTTACCTCCAAGTCCTTTCTCGGTTCCTCAAGAATCGACGGTGCTTCAATATCCTCCGACCTCCGTAAACTCTCAATATCCTCCG
TTCAGATCTCCTTCCGCTCACGTATTCCAAAGAAACTCCAAATAAATGCGGCGGGAAGCACATTTGGGACTAATTTTAGAGTAACTACATTTGGTGAGTC
ACACGGAGGTGGTGTTGGTTGTATAATTGATGGATGTCCTCCGCGCATCCCCCTATCCGAAGCTGATATGCAATTTGATCTAGATAGAAGGAGGCCAGGT
CAGAGCCGAATTACGACTCCGAGAAAAGAGACGGATACCTGCAAAATATCTTCCGGTGTTTCTGAAGGACTGACTACTGGGACGCCGATTCATGTATTTG
TACCAAATACTGATCAGAGAGGATTAGATTACAGTGAAATGTCAGTTGCTTACAGGCCTTCACATGCAGACGCAACTTATGACATGAAGTATGGTGTTAG
ATCAGTTCAGGGTGGGGGTAGATCTTCAGCAAGAGAAACAATTGGAAGAGTTGCTGCTGGAGGTGTTGCTAAGAAAATTCTCAAACTATATGCAGGAACT
GAGATTCTTGCTTATGTCTCTCAAGTCCACAAGGTTGTACTTCCAGAAGGTGTGGTTGATCACGACTCTCTTACACTTGATCAGATGGAGAGCAATATTG
TCAGATGTCCAGATCCTGAATATGCAGAGAAGATGATAGCTGCCATTGATGCTGTCCGAGTGAAAGGGGATTCTGTTGGTGGTGTTGTCACTTGTATTGT
AAGGAATGCACCGCGTGGGCTTGGTTCACCAGTCTTTGACAAACTTGAAGCTGAGCTTGCTAAAGCTGCTATGTCACTACCTGCAACAAAGGGCTTTGAA
TTTGGGAGTGGATTTGCAGGCACTCTCTTGACTGGGAGTGAACATAATGACGAGTTCTACACAGACAAACATGGAAGAATCCGAACAAGAACAAATCGTT
CTGGTGGAATACAGGGAGGAATATCAAATGGTGAAATTATAAACATGAGAATAGCTTTCAAGCCAACATCTACAATAGGAAAGAAGCAACATACAGTTAC
TAGAGATAAAAAGGAGACAGATCTAATTGCTCGCGGTCGCCATGATCCCTGTGTTGTCCCACGAGCGGTACCAATGGTGGAAGCTATGGTGGCCTTGGTG
CTCATGGACCAGTTGATGGCACAATACTCGCAATGCTATCTGCTTCCCATCAATTCAGAGCTACAAGAACCCTTGATAATGCCAAGACTTGAGGCAGCCA
ATGCGTCTGTATGA
AA sequence
>Potri.010G221600.4 pacid=42799136 polypeptide=Potri.010G221600.4.p locus=Potri.010G221600 ID=Potri.010G221600.4.v4.1 annot-version=v4.1
MASSTLTSKSFLGSSRIDGASISSDLRKLSISSVQISFRSRIPKKLQINAAGSTFGTNFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQFDLDRRRPG
QSRITTPRKETDTCKISSGVSEGLTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAAGGVAKKILKLYAGT
EILAYVSQVHKVVLPEGVVDHDSLTLDQMESNIVRCPDPEYAEKMIAAIDAVRVKGDSVGGVVTCIVRNAPRGLGSPVFDKLEAELAKAAMSLPATKGFE
FGSGFAGTLLTGSEHNDEFYTDKHGRIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGKKQHTVTRDKKETDLIARGRHDPCVVPRAVPMVEAMVALV
LMDQLMAQYSQCYLLPINSELQEPLIMPRLEAANASV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48850 EMB1144 embryo defective 1144, chorism... Potri.010G221600
[exp]
0 1
AT4G27270 Quinone reductase family prote... Potri.004G028900
[exp]
7.48 0.8968
AT3G56230 BTB/POZ domain-containing prot... Potri.013G083800
[exp]
8.24 0.8992
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Potri.010G187600
[exp]
9.89 0.8907
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Potri.008G069900
[exp]
22.36 0.8952
AT3G57070 Glutaredoxin family protein (.... Potri.006G041800
[exp]
23.43 0.8281
AT3G52500 Eukaryotic aspartyl protease f... Potri.006G204700
[exp]
25.27 0.8542
AT2G34410 RWA3 REDUCED WALL ACETYLATION 3, O-... Potri.011G079400
[exp]
25.33 0.8954
AT2G37585 Core-2/I-branching beta-1,6-N-... Potri.006G263000
[exp]
26.73 0.8834
AT5G48930 HCT hydroxycinnamoyl-CoA shikimate... Potri.001G042900
[exp]
28.00 0.8605
AT2G37090 IRX9 IRREGULAR XYLEM 9, Nucleotide-... Potri.006G131000
[exp]
28.56 0.8942

Potri.010G221600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.