Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54960 275 / 2e-87 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT5G60640 256 / 7e-80 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G52260 123 / 2e-30 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 119 / 4e-29 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G77510 99 / 4e-22 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT1G21750 92 / 6e-20 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT2G47470 64 / 5e-11 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT4G27080 61 / 8e-10 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT1G04980 59 / 4e-09 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT1G35620 56 / 2e-08 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G040100 [exp] 387 / 9e-132 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.009G013600 [exp] 280 / 9e-89 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.001G183500 [exp] 110 / 6e-26 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.005G179000 [exp] 97 / 9e-22 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 95 / 8e-21 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.014G122800 [exp] 66 / 1e-11 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.001G419300 [exp] 63 / 1e-10 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.013G111400 [exp] 63 / 2e-10 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.011G135500 [exp] 61 / 9e-10 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037403 [exp] 264 / 3e-82 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 246 / 1e-75 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 244 / 1e-74 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10041307 [exp] 204 / 7e-60 AT5G60640 536 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 121 / 1e-29 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10025792 [exp] 103 / 5e-24 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Lus10018156 [exp] 101 / 4e-23 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 84 / 2e-17 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 84 / 4e-17 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10016798 [exp] 67 / 8e-12 AT1G35620 546 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] Thioredoxin PF13848 [poplar] [flax] Thioredoxin_6 Thioredoxin-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G222100.2 pacid=42796906 polypeptide=Potri.010G222100.2.p locus=Potri.010G222100 ID=Potri.010G222100.2.v4.1 annot-version=v4.1 ATGCCACAAACATGGTTCCACATCTTCTATCTCTTCAATTCAATCCTTCTTACTTTCACCATCTTTTACATTACACCAATCTCTGAACTTCTATTCTTTA AAGAAGTCAACGACTATAATGATCTCACCAAGATACCAGAATTCATCCCAATGCCACCGGTCGATTGTAAGAATGAGAAATCTTTATTTGATGAGAAGGA TGTGGAGGTGCTGACACAAAATAATTTCAGCGAATTTGTTGCTGCAACTCAACACGTGATGTTGAATTTTTATGCTCCATGGTGTGTTTGGAGTCAGAGG TTAGCCCCCGAATACGCTGCTGCTGCTACCATGCTAAAAGGTGAGGCTGTTTTTGCAAAGATAGATGCTACCAACGAAATAGAATTGGGGAAGATGTTCA AGATTAAGGAGTATCCTACAATGTATTTATTAGTCAACGGAGGAGTTCAAAAGGTTACGTATGATTTAACTGATGAAAGGACTACTGATGCTATTACAAC TTGGGTGAGGCAGAAGATGAGCCGTGCTGTCCAAAATGTGACAACAATTGAGGCGGCTGAGAGAATATTGGCAGCAAGATCTGTTTTAGTGATGGGATTC TTCGGTGCTTTAGAGGGTTCTGACAGCGAGGAGCTTGCTGCGGTGGCAAAGCAGCATATTGATGTCAACTTCTATCAAACTGCTAATGCTGAGGTTGCAA GGCTTTTCCAAATCGACCCACAAATCAAACAACCTGCCTTGGTCATGCTGAAGCTGAAGTGGATGACAAGAAATCATAACCATTTTGGTTTTGATTGTCA ATTCACTAGATCAGAAATATCAAACTTTGTATCCGAAAATAAACTTCCTTCGGTGATCACTTTCTCAGAAGAAGATGCTCCCAACATATTCAAAAATCCT ATGAAACAGTTGTGGCTTTTTGCTGCTACATATCCTAAGGAGGTGTTAGCCCCATTCATAGAGGCAGCAGATCATCTCAAAGGGAAGCTTCTCTTTGTCC ATGTCGAAACTGAATATAATTCTATGCAAAGGCGAGTTTCTTATGAATTTGGCGTTGCTGAAGGTCTTCCAACACTTGTAGGGTATACGGCGAACGGAGC CGATAAGCATGTATATAACAGTGATTTGTCTTTCAATGGTATCAAGGCATTTGCAGAGAAGTTTTTGGAAGACAAGCCTCCTAGCCAACCATCTTCAACT CCAGATAACGTTATTAAACTCCCATTCCGTACTCATAACTCCGGTCCAACTTCCACCGGATGGGCATTCTAG
AA sequence Show only first row Show all	>Potri.010G222100.2 pacid=42796906 polypeptide=Potri.010G222100.2.p locus=Potri.010G222100 ID=Potri.010G222100.2.v4.1 annot-version=v4.1 MPQTWFHIFYLFNSILLTFTIFYITPISELLFFKEVNDYNDLTKIPEFIPMPPVDCKNEKSLFDEKDVEVLTQNNFSEFVAATQHVMLNFYAPWCVWSQR LAPEYAAAATMLKGEAVFAKIDATNEIELGKMFKIKEYPTMYLLVNGGVQKVTYDLTDERTTDAITTWVRQKMSRAVQNVTTIEAAERILAARSVLVMGF FGALEGSDSEELAAVAKQHIDVNFYQTANAEVARLFQIDPQIKQPALVMLKLKWMTRNHNHFGFDCQFTRSEISNFVSENKLPSVITFSEEDAPNIFKNP MKQLWLFAATYPKEVLAPFIEAADHLKGKLLFVHVETEYNSMQRRVSYEFGVAEGLPTLVGYTANGADKHVYNSDLSFNGIKAFAEKFLEDKPPSQPSST PDNVIKLPFRTHNSGPTSTGWAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	0	1
AT1G34580			Major facilitator superfamily ...		Potri.002G095900 [exp]	1.41	0.9303	HT1.1
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	3.46	0.9162
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	3.87	0.9103
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.003G147400 [exp]	4.00	0.9202
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	7.48	0.9034
AT4G02370			Protein of unknown function, D...		Potri.014G127500 [exp]	8.12	0.8775
AT5G48810		B5#3, ATB5-B, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.014G019200 [exp]	9.48	0.8909
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	10.24	0.8895	Pt-AUX28.3
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040300 [exp]	14.69	0.8674
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	14.96	0.8796

Compare expression of checked genes

Potri.010G222100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.