Plant FIBer expression Database

Potri.010G222500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13810 242 / 2e-78 Restriction endonuclease, type II-like superfamily protein (.1)
AT1G67660 175 / 3e-52 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G039800
[exp]
260 / 2e-87 AT1G13810 143 / 2e-42 Restriction endonuclease, type II-like superfamily protein (.1)
Potri.010G054800
[exp]
180 / 1e-53 AT1G67660 391 / 7e-136 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010434
[exp]
327 / 5e-111 AT1G13810 216 / 5e-68 Restriction endonuclease, type II-like superfamily protein (.1)
Lus10017632
[exp]
321 / 1e-109 AT1G13810 216 / 6e-69 Restriction endonuclease, type II-like superfamily protein (.1)
Lus10033589
[exp]
253 / 4e-80 AT1G13810 161 / 4e-45 Restriction endonuclease, type II-like superfamily protein (.1)
Lus10012108
[exp]
167 / 1e-51 AT1G13810 113 / 2e-31 Restriction endonuclease, type II-like superfamily protein (.1)
Lus10006437
[exp]
92 / 5e-23 AT1G67660 172 / 8e-55 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
Lus10011377
[exp]
90 / 5e-22 AT1G67660 169 / 1e-53 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF09588 YqaJ YqaJ-like viral recombinase domain
Representative CDS sequence
>Potri.010G222500.1 pacid=42798526 polypeptide=Potri.010G222500.1.p locus=Potri.010G222500 ID=Potri.010G222500.1.v4.1 annot-version=v4.1
ATGCTGCCGAGTCCTCTTCGCAAACTTGCCCGTGAAGAATTTGTATCTTGTTTCCTCATCAATTTCCGACTTTCATATTACAACAGCAAATATAATTGTG
ATATAGGTCCTTTTAAAGTTGATATTAGCAACAGAAGAAACTACTCAAGCCAGGTTTTATTGGATCCATTAGGTGAAGAGCAACCTGTAAATTCTCAAAT
CTACAATCATTCCTGTACAAGAGATTCAAGTAGTCCTTATATATCGATTCTTCAATCCAGTAGTCTTCAGCACAGGTTCAAAAAATGGCAAGATCAAAGA
AAGCATAAACTGACGGCAAGCACTTTCAGTGGGGCTATTGGTTTTTGGCGTGGTAGGCGAGTCCAGCTCTGGTTAGAGAAACTTGGTGCAAAAGAACCAT
TTTCTGGTAACATGGCTACCTGTTGGAGCAATGCCAAAGAAGAGGAAGCACTTGAAAGATATAAGTTGATTACAGGAAATACAATTTTGTTTCCCAGATT
TCAGGTCTATGGTAAGAACAACTTAAAAGATGATTGGCTTGCAGCTTCACCTGATGGGATAATTGACAAGTATTATGGGTTGAATTCCAGAGGAGTGTTA
GAAATAAAGTGTCCATTTTTTAATGGAGATATGAAAAGGGCTTCACCTTGGAAGCGGATCCCCCTTTATTGTATTCCACAAGCTCAAGGTTTAATGGAAA
TACTGGACAAGGATTGGATGGATTTCTATGTTTGGACTCCTAATGGAAGCAGTCTATTCAGGTTATACCGAGATGAGGCATACTGGGATGCTTTGAAAAT
AGCACTTTCTGATTTCTGGTTTAACCATGTCCTACCAGCGAAGGAGTTGTGCAGTAAAAATGTGATAACAGATCCCCTGAAGGAATTAGGATCATTGAAG
CCTGCGCCTAGGCATGAATTGTATAGATATATAGTTTATGAAAGCAAACATGCTGTTGATAGCTCTCACTTACTGATGCGTGAAATTAATGGGCACCTTC
AAAATTGA
AA sequence
>Potri.010G222500.1 pacid=42798526 polypeptide=Potri.010G222500.1.p locus=Potri.010G222500 ID=Potri.010G222500.1.v4.1 annot-version=v4.1
MLPSPLRKLAREEFVSCFLINFRLSYYNSKYNCDIGPFKVDISNRRNYSSQVLLDPLGEEQPVNSQIYNHSCTRDSSSPYISILQSSSLQHRFKKWQDQR
KHKLTASTFSGAIGFWRGRRVQLWLEKLGAKEPFSGNMATCWSNAKEEEALERYKLITGNTILFPRFQVYGKNNLKDDWLAASPDGIIDKYYGLNSRGVL
EIKCPFFNGDMKRASPWKRIPLYCIPQAQGLMEILDKDWMDFYVWTPNGSSLFRLYRDEAYWDALKIALSDFWFNHVLPAKELCSKNVITDPLKELGSLK
PAPRHELYRYIVYESKHAVDSSHLLMREINGHLQN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13810 Restriction endonuclease, type... Potri.010G222500
[exp]
0 1
AT5G01660 unknown protein Potri.016G127600
[exp]
2.00 0.7911
AT4G16110 GARP ARR2 response regulator 2 (.1) Potri.002G152900
[exp]
15.96 0.7178
AT4G31810 ATP-dependent caseinolytic (Cl... Potri.006G264200
[exp]
18.97 0.7315
AT5G55760 SRT1 sirtuin 1 (.1) Potri.001G368100
[exp]
19.44 0.7134
AT1G48050 KU80, ATKU80 ARABIDOPSIS THALIANA KU80 HOMO... Potri.002G148200
[exp]
21.67 0.7267
AT3G49000 RNA polymerase III subunit RPC... Potri.015G144900
[exp]
28.03 0.7519
AT5G52545 unknown protein Potri.004G079400
[exp]
28.14 0.7446
AT1G13290 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIV... Potri.010G129000
[exp]
30.24 0.7895
AT2G32940 AGO6 ARGONAUTE 6, Argonaute family ... Potri.014G159400
[exp]
32.24 0.6986 AGO902
AT4G00231 MEE50 maternal effect embryo arrest ... Potri.014G074900
[exp]
32.40 0.6758

Potri.010G222500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.