Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PIP2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54820 484 / 5e-175 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G37170 480 / 2e-173 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G53420 476 / 6e-172 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT5G60660 471 / 1e-169 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT2G37180 471 / 1e-169 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT2G39010 459 / 4e-165 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT2G16850 453 / 1e-162 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT4G35100 445 / 2e-159 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT4G00430 407 / 2e-144 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 399 / 2e-141 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039600 [exp] 526 / 0 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.006G128000 [exp] 503 / 0 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128200 [exp] 501 / 0 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 495 / 3e-179 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.016G089500 [exp] 478 / 2e-172 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.004G176300 [exp] 455 / 2e-163 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.009G136600 [exp] 451 / 5e-162 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.016G113300 [exp] 405 / 8e-144 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G098100 [exp] 400 / 7e-142 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019934 [exp] 496 / 2e-179 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 493 / 2e-178 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023515 [exp] 481 / 1e-173 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10040399 [exp] 473 / 5e-170 AT3G54820 474 / 1e-170 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10014978 [exp] 449 / 6e-161 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 447 / 2e-160 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 447 / 3e-160 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10041397 [exp] 410 / 9e-146 AT3G53420 412 / 6e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Lus10028273 [exp] 397 / 3e-140 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10035483 [exp] 374 / 3e-131 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.010G222700.1 pacid=42797347 polypeptide=Potri.010G222700.1.p locus=Potri.010G222700 ID=Potri.010G222700.1.v4.1 annot-version=v4.1 ATGGCGAAGGACATGGAAGTTGCAGAGGCAGGATCATTCTCTGCGAAGGACTACCATGACCCACCACCAGCACCATTGTTTGATGCTAAAGAGTTAACAA AGTGGTCATTTTACAGGGCCTTGATTGCTGAGTTTATAGCAACACTGCTCTTTCTTTATATCACTGTTTTGACTGTTATTGGTTACAAGAGCCAGATTGA TGGAAGTGCTGATTCTTGTGGTGGGGTTGGTATTCTTGGTATTGCCTGGGCCTTTGGTGGCATGATCTTTGTTCTTGTATACTGCACTGCTGGTATTTCA GGGGGTCACATTAACCCAGCAGTGACATTTGGGCTTTTCCTAGCCAGGAAGGTCTCTTTGATCCGGGCTGTGATGTACATGGTGGCTCAATGCTTAGGAG CCATATGTGGCGTTGGGCTTGTTAAGGCCTTCCAAAAGTCTTACTACAAGAAGTATGGTGGTGGAGCCAACACTTTGGCCGATGGGTTCAGCACCGGCAC TGGATTGGGTGCTGAGATCATTGGCACTTTTGTCCTGGTCTACACTGTTTTCTCTGCTACAGATCCAAAGAGGAGTGCTAGGGACTCCCATGTGCCTGTT TTGGCTCCTCTTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACTGGCATCAACCCTGCTAGGAGTCTGGGAGCCG CTGTTATCTACAACCAAGACAAGGCCTGGGATGGCCATTGGATCTTCTGGGTTGGACCCTTCGCTGGTGCAGCCATTGCAGCTTTCTACCACCAATTCAT CTTGAGAGCAGGAGCTGTCAAGGCTCTTGGATCATTCAGGAGCGCCCAACGGTTTTAA
AA sequence Show only first row Show all	>Potri.010G222700.1 pacid=42797347 polypeptide=Potri.010G222700.1.p locus=Potri.010G222700 ID=Potri.010G222700.1.v4.1 annot-version=v4.1 MAKDMEVAEAGSFSAKDYHDPPPAPLFDAKELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQIDGSADSCGGVGILGIAWAFGGMIFVLVYCTAGIS GGHINPAVTFGLFLARKVSLIRAVMYMVAQCLGAICGVGLVKAFQKSYYKKYGGGANTLADGFSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQDKAWDGHWIFWVGPFAGAAIAAFYHQFILRAGAVKALGSFRSAQRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Potri.010G222700 [exp]	0	1	Pt-PIP2.3
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.001G309500 [exp]	4.79	0.8324	Pt-PEAC14.1,ACT1
AT4G29340		PRF4	profilin 4 (.1)		Potri.003G047700 [exp]	9.38	0.8245	Pt-PRO1.2
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Potri.001G190800 [exp]	11.31	0.8193	Pt-PRO1.1
AT3G17130			Plant invertase/pectin methyle...		Potri.008G102600 [exp]	22.04	0.7494
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Potri.008G084400 [exp]	22.64	0.8214
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.001G112000 [exp]	27.11	0.8115
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.019G010400 [exp]	27.29	0.8185	PEAC14.4
AT1G73620			Pathogenesis-related thaumatin...		Potri.012G047800 [exp]	28.46	0.7861
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.013G025900 [exp]	30.98	0.8097
AT3G56750			unknown protein		Potri.006G040400 [exp]	36.49	0.8181

Compare expression of checked genes

Potri.010G222700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.