Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13570 460 / 2e-163 TDT, DCP2, ATDCP2 TRIDENT, decapping 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039500 [exp] 603 / 0 AT5G13570 460 / 1e-163 TRIDENT, decapping 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023516 [exp] 528 / 0 AT5G13570 462 / 4e-164 TRIDENT, decapping 2 (.1.2) Lus10040400 [exp] 511 / 0 AT5G13570 461 / 2e-163 TRIDENT, decapping 2 (.1.2) Lus10006365 [exp] 42 / 0.0005 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain CL0261 [poplar] [flax] PF05026 [poplar] [flax] DCP2 Dcp2, box A domain
Representative CDS sequence Show only first row Show all	>Potri.010G222800.4 pacid=42798496 polypeptide=Potri.010G222800.4.p locus=Potri.010G222800 ID=Potri.010G222800.4.v4.1 annot-version=v4.1 ATGTCCGGCCTGAATCGATTTAGTAGCGTTCCGTTTAAGAACGGCGGTCTTCCTCCACAAGAACTCCTCGACGATCTCTGCAGTAGGCTTGTTCTAAATG TGCCAAAAGAAGACCAGCAATCGTTCGAGAGAATTCTATTTCTGGTCGAGAACGCGCATTGGTTCTATGAAGATAATTCTGTCGAGAAAAATCCCTCATT AAAGTCCTTCACCTTGAAGGAATTCACTTCTTTAATGTTTAACAGTTGTGATGTTTTAAGACCGTATGTTGCTCATATTGATGATATTTTTAAGGATTTT ACTTCTTACAAAGTTAAAGTTCCGGTGACCGGTGCGATTATTTTGGATGAGACTTTTGAACGGTGCTTGCTAGTGAAGGGATGGAAAGGGACGAGCTGGA GTTTCCCAAGGGGAAAAAAGAACAAAGATGAGGAAGACCATGCTTGTGCTATCCGAGAAGTGCTGGAGGAAACTGGCTTTGATGTTTCAAATCTTCTTAA CAAAGATGACTACATTGAAGAGATGTTTGGACAGCAGAGGGTGCGGCTTTACATAATTGCTGGTGTGAAGTATGATACTGCCTTTGCACCTCTTACGAAA AAGGAGATCAGTGAAATTGCATGGCAGCGGCTTGATGAACTTCAGTCAGCAAGTGACGAAGTAATATCTCGCAGCATCACTGGCCTCAAGCTTTACATGG TTGCTCCGTTTTTAGTGTCTTTGAAATCGTGGATTTTGTCACACCAGCCCCCTGCAGCCCCAAGACCTGATATGCCTCTCAAAGCTACGTGTGTGTGGAA AGCGAAGAACACTTCTTTAGGGAGCGGCACAGTGATAACAGAGAGCCATTTAACTAAGCCTGTATTTGATGCTCATCCTCTTGACATGGGCCCTGGCAAG AGCTTCAGAAATTTTAGATTTGATACTGCTGCAATCTTGCAAGCGATGGAATCTGGGATCTCTCAGAGATTTGATATGACATAA
AA sequence Show only first row Show all	>Potri.010G222800.4 pacid=42798496 polypeptide=Potri.010G222800.4.p locus=Potri.010G222800 ID=Potri.010G222800.4.v4.1 annot-version=v4.1 MSGLNRFSSVPFKNGGLPPQELLDDLCSRLVLNVPKEDQQSFERILFLVENAHWFYEDNSVEKNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDF TSYKVKVPVTGAIILDETFERCLLVKGWKGTSWSFPRGKKNKDEEDHACAIREVLEETGFDVSNLLNKDDYIEEMFGQQRVRLYIIAGVKYDTAFAPLTK KEISEIAWQRLDELQSASDEVISRSITGLKLYMVAPFLVSLKSWILSHQPPAAPRPDMPLKATCVWKAKNTSLGSGTVITESHLTKPVFDAHPLDMGPGK SFRNFRFDTAAILQAMESGISQRFDMT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Potri.010G222800 [exp]	0	1
					Potri.002G248000 [exp]	2.82	0.7500
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.002G195700 [exp]	5.47	0.7337
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.016G075500 [exp]	6.48	0.7405
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.009G119200 [exp]	9.53	0.7185
AT1G03760			Prefoldin chaperone subunit fa...		Potri.017G012500 [exp]	11.31	0.7036
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Potri.005G142732 [exp]	11.61	0.7338
AT5G09390			CD2-binding protein-related (....		Potri.001G205700 [exp]	12.04	0.6760
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	15.00	0.7436
AT1G68490			unknown protein		Potri.012G056500 [exp]	18.00	0.7020
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.001G265200 [exp]	18.16	0.6374	ARP7.1,ARP903

Compare expression of checked genes

Potri.010G222800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.