Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT4G28030 46 / 1e-05 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039300 [exp] 448 / 2e-160 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.006G176500 [exp] 49 / 1e-06 AT4G28030 284 / 2e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.005G054600 [exp] 45 / 2e-05 AT1G72030 216 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.013G134102 [exp] 41 / 0.0003 AT1G03650 242 / 2e-83 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.013G134000 [exp] 41 / 0.0003 AT1G03650 240 / 2e-82 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023517 [exp] 390 / 2e-138 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10040401 [exp] 387 / 6e-137 AT2G39000 386 / 3e-136 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10037996 [exp] 353 / 1e-122 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10009229 [exp] 338 / 2e-118 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10019975 [exp] 50 / 6e-07 AT4G28030 322 / 3e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10021995 [exp] 44 / 8e-05 AT1G72030 181 / 4e-56 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10041016 [exp] 43 / 0.0001 AT5G16800 334 / 1e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10042534 [exp] 43 / 0.0002 AT1G72030 179 / 3e-55 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10013457 [exp] 42 / 0.0002 AT5G16800 337 / 1e-117 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10025567 [exp] 40 / 0.0007 AT1G03650 233 / 8e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF00583 [poplar] [flax] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Potri.010G222900.1 pacid=42799302 polypeptide=Potri.010G222900.1.p locus=Potri.010G222900 ID=Potri.010G222900.1.v4.1 annot-version=v4.1 ATGCGGTCCATACAGCTGGGATTCTCAGTATCTCCCTCATCTATTAACAACAACCTTCTTAATTTCAATTTCAAGAAACAATCTTTTTTTACTCCTACAA GGGTTTCTCATCATCAATACTCTCTCCCCACAACAGGACTATGCAGCAGAGCGAGTCAAGTGGTTGAATTGTTCCCTACTGTATCTCCAGGGATAGTTGT AAGGGAAGCAAGATTAGAAGATTGCTGGGAAGTGGCTGAGACTCACTGCAGTTCCTTCTTTCCTGATTATTCCTTCCCTCTACATTTTGTGCTAAGGGTT GACAGGCTGGTAGCAATGCTATCAGGATTCACTATACCAAATGGCTGCAGAAGAACTTGTCTGGTTGCTGTCATTGGTAGCACAGGTGATCAAACTTTCT ATATTGGAAGTGAAGATTTCAAAATTGGAGGTTCTGATGGGAATTTCAGTCTTAATCGAGGCTATATTGCTGGGATATTGACCGTGGACACTGTTGCTAA TTTTCTCCCAAGGAAAGGCCCACTCAGGCAGAGAAGGACTGGAATTGCATATATATCGAATGTTGCTGTTCGGGAGAGATTTCGCCAGAAGGGGATAGGT AAAAGGCTCGTAGCAAAGGCAGAGGCTCAAGCTAGGAACTGGGGCTGCCGTTCCATTGCTTTGCACTGTGATTCGAATAATCCTGGAGCCACCAAACTGT ACAAGGGGCAGGGTTTCAAAAGTATCAAGGTACCAGAAGGTGCAAACTGGCCGCACCCCAAAACCTCTCCAGATATCAAATTCAACTTCATGATGAAGCT TGTAAACACCCCAATCACAACATAG
AA sequence Show only first row Show all	>Potri.010G222900.1 pacid=42799302 polypeptide=Potri.010G222900.1.p locus=Potri.010G222900 ID=Potri.010G222900.1.v4.1 annot-version=v4.1 MRSIQLGFSVSPSSINNNLLNFNFKKQSFFTPTRVSHHQYSLPTTGLCSRASQVVELFPTVSPGIVVREARLEDCWEVAETHCSSFFPDYSFPLHFVLRV DRLVAMLSGFTIPNGCRRTCLVAVIGSTGDQTFYIGSEDFKIGGSDGNFSLNRGYIAGILTVDTVANFLPRKGPLRQRRTGIAYISNVAVRERFRQKGIG KRLVAKAEAQARNWGCRSIALHCDSNNPGATKLYKGQGFKSIKVPEGANWPHPKTSPDIKFNFMMKLVNTPITT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39000			Acyl-CoA N-acyltransferases (N...		Potri.010G222900 [exp]	0	1
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.010G189900 [exp]	4.89	0.9525
AT4G37920			unknown protein		Potri.007G000400 [exp]	8.30	0.9556
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.009G029100 [exp]	9.38	0.9535	ALB3.1
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G147600 [exp]	10.24	0.9315
AT2G43235			unknown protein		Potri.007G124600 [exp]	14.07	0.9325
AT3G09310			unknown protein		Potri.016G099700 [exp]	14.69	0.9518
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Potri.014G146900 [exp]	15.65	0.9489
AT5G51910	TCP	TCP19	TCP family transcription facto...		Potri.012G135900 [exp]	18.65	0.9167
AT1G31200		ATPP2-A9	phloem protein 2-A9 (.1)		Potri.015G118850 [exp]	19.28	0.9019
AT5G06130			chaperone protein dnaJ-related...		Potri.006G210500 [exp]	19.39	0.9018

Compare expression of checked genes

Potri.010G222900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.